PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00706.20
Common NameJCGZ_21461, LOC105649564
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family SBP
Protein Properties Length: 103aa    MW: 11440.8 Da    PI: 6.2506
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00706.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.87.1e-2457103248
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                    Cq+++C+ad+++ak+yhrrhkvCe+h+kap v+v+g++qrfCqqCsr
  Jcr4S00706.20  57 CQADNCTADMTDAKRYHRRHKVCEFHAKAPLVVVAGIQQRFCQQCSR 103
                    **********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-2450103IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.17954103IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.76E-2355103IPR004333Transcription factor, SBP-box
PfamPF031104.6E-1857103IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MSTSKAEGKR SLKEMEDEEE EEDEEDCVGG LGFGDDDKKK KNKKGSIGSG SMPPVSCQAD  60
NCTADMTDAK RYHRRHKVCE FHAKAPLVVV AGIQQRFCQQ CSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-2049103357squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091635.17e-71squamosa promoter-binding-like protein 3 isoform X1
RefseqXP_012091636.16e-71squamosa promoter-binding-like protein 3 isoform X2
SwissprotQ387411e-29SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A067JLV21e-69A0A067JLV2_JATCU; Squamosa promoter-binding-like protein
STRINGcassava4.1_018710m2e-39(Manihot esculenta)
STRINGXP_002509450.12e-39(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.15e-22squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]