PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00694.30

Common Name

JCGZ_06792

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 267aa MW: 30782.5 Da PI: 6.0607

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00694.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	139.8	1.7e-43	4	138	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.vikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrF Pt+eel+++yL++k+eg++ +++ + +i+ +diy+++Pw+Lp+ +++ + ++w+fF++r++++a+g r++r t++gyWkatg+ Jcr4S00694.30 4 LPPGFRFYPTEEELISFYLHNKLEGRRedlNRIMDrIIPVLDIYEHNPWELPQfagDLSSrDPEQWFFFIPRQESEARGGRPKRLTTNGYWKATGS 99 79***********************66633333269999*******6466333325569*************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +v+s++++ +g+k+t+vfy+grap g+kt W m+ey+ Jcr4S00694.30 100 PGQVFSNNSRIIGIKRTMVFYTGRAPYGRKTVWKMNEYK 138 ************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-46	3	170	IPR003441	NAC domain
PROSITE profile	PS51005	48.17	4	170	IPR003441	NAC domain
Pfam	PF02365	2.5E-22	5	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEDLPPGFRF YPTEEELISF YLHNKLEGRR EDLNRIMDRI IPVLDIYEHN PWELPQFAGD 60 LSSRDPEQWF FFIPRQESEA RGGRPKRLTT NGYWKATGSP GQVFSNNSRI IGIKRTMVFY 120 TGRAPYGRKT VWKMNEYKAI VQEHASSSSS TTAGSPVLRH EFSLCRVYKK SKSLRAFDRR 180 PLGVEMLRDQ TGAAAHGDEA TTSCQNLKME KMEIANSPDE SSSSQGTNNN IPDQIGERSN 240 IMPMVTDTQP FWDWDPLDWN YLEETIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-33	4	173	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-33	4	173	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-33	4	173	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-33	4	173	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-33	4	173	20	171	NAC domain-containing protein 19
3swm_B	1e-33	4	173	20	171	NAC domain-containing protein 19
3swm_C	1e-33	4	173	20	171	NAC domain-containing protein 19
3swm_D	1e-33	4	173	20	171	NAC domain-containing protein 19
3swp_A	1e-33	4	173	20	171	NAC domain-containing protein 19
3swp_B	1e-33	4	173	20	171	NAC domain-containing protein 19
3swp_C	1e-33	4	173	20	171	NAC domain-containing protein 19
3swp_D	1e-33	4	173	20	171	NAC domain-containing protein 19
4dul_A	1e-33	4	173	17	168	NAC domain-containing protein 19
4dul_B	1e-33	4	173	17	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775316	1e-174	KC775316.1 Jatropha curcas NAC transcription factor 038 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020535179.1	0.0	NAC domain-containing protein 90
TrEMBL	R4NFV0	0.0	R4NFV0_JATCU; NAC transcription factor 038
STRING	cassava4.1_029154m	1e-113	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	7e-77	NAC domain containing protein 90

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188]