PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00680.50
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 476aa    MW: 53426.7 Da    PI: 9.6767
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00680.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07155198246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + WT+eE ++l d+++++  + +  Ia +++  Rt +++k+r+++
    Jcr4S00680.50 155 QTWTKEETDQLFDLCERFDLR-FIIIADRFPSSRTVEELKDRYYS 198
                      68*******************.*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162826.0E-28102203IPR032563DAMP1, SANT/Myb-like domain
SuperFamilySSF466891.3E-6152202IPR009057Homeodomain-like
SMARTSM007172.1E-8153202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-6155200IPR009057Homeodomain-like
CDDcd116585.32E-19157199No hitNo description
PfamPF054996.2E-7347415IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0016021Cellular Componentintegral component of membrane
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDAKDILGLP KTPLPLTQEK KSQPKKDSQR KPDGISREVY ALTGGLAPLM PSIDTNQLKR  60
RPPSDEKITW QWLPFTNSAR KDNLHLYHWV RVVNGVPPTG DYSFAKYNKS VDVVKYTDEE  120
YEKHLTDPVG INSWFHLYNF LLLLNCEVSI KHAGQTWTKE ETDQLFDLCE RFDLRFIIIA  180
DRFPSSRTVE ELKDRYYSVS RAILIARAPS SGDVAGHPLV KEPYNVSQEI DRKRALSMVL  240
SQTKQQERKD AEVLAEAKRI TESRMAARGV EESTLPVTLN AGPEIAETAT NIDDTVAPSS  300
NPQLASAAAA PSTSIMAENA STLASLRMLR VYLRTYALEQ MVQAASSSAG LRTIKRVEQT  360
LQDLGVNLKP RVPTKAVCAE HLELRKEILT LLNLQKQLQY KEAEGSSFRD GSYAEMPGTP  420
KRSHRDQDRT FVPDSMSFGG ERTGRRDQKR KGPGRLSEGP SSPAHKRPRK LKAADL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A5e-16101213493DNA methyltransferase 1-associated protein 1
4iej_A5e-16101213493DNA methyltransferase 1-associated protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444450RRDQKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082946.10.0SWR1-complex protein 4 isoform X3
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A067JZU00.0A0A067JZU0_JATCU; Uncharacterized protein
STRINGcassava4.1_007547m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49752330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]