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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Jcr4S00637.100 |
| Common Name | JCGZ_23368, LOC105647568 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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| Family |
NF-YC |
| Protein Properties |
Length: 222aa MW: 24349.4 Da PI: 5.8404 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Jcr4S00637.100 | genome | Kazusa | View CDS |
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| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 102.7 | 2.5e-32 | 80 | 147 | 1 | 65 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlh 65
ql+sfw++q ++k++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr l+
Jcr4S00637.100 80 QLQSFWANQyqeVDKVADFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLREDLK 147
89******9888899*************************************************8665 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 222 aa
Download sequence Send
to blast |
MDQQGHGQPP AIGVVSSAGQ MPYGTNPYQP NQMSSAQNPG SVSSVGTIHS TGQPAGAQLA 60
QHQLAYQQIQ HQQQQQLQQQ LQSFWANQYQ EVDKVADFKN HSLPLARIKK IMKADEDVRM 120
ISAEAPVVFA RACEMFILEL TLREDLKDEV LASISRGAMT VGADALPYGY MPPQHAAQVG 180
TGMIMGKPVM DPPMFAQQSH AYMAQQMWPQ QGSEQQQSPS DN
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
| UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
| Publications
? help Back to Top |
- Zhang L, et al.
Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
PLoS ONE, 2014. 9(5): p. e97878
[PMID:24837971] - Hwang YH, et al.
Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
Plant Cell Rep., 2016. 35(4): p. 857-65
[PMID:26754793] - Liu X, et al.
The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
Nat Commun, 2016. 7: p. 12768
[PMID:27624486] - Myers ZA, et al.
NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
PLoS Genet., 2016. 12(9): p. e1006333
[PMID:27685091] - Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M
Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants.
Mol Plant, 2017. 10(4): p. 645-648
[PMID:27871811] - Tang Y, et al.
Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
Mol Plant, 2017. 10(2): p. 260-273
[PMID:27876642] - Zhao H, et al.
The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
Front Plant Sci, 2016. 7: p. 2045
[PMID:28119722] - Gnesutta N, et al.
CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.
Plant Cell, 2017. 29(6): p. 1516-1532
[PMID:28526714] - Bi C,Ma Y,Wang XF,Zhang DP
Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis.
Plant Mol. Biol., 2017. 95(4-5): p. 425-439
[PMID:28924726] - Liu X, et al.
Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering.
Plant Physiol., 2018. 177(1): p. 105-114
[PMID:29599268]
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