PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 636aa MW: 73765.6 Da PI: 5.8644

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00606.70	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.6	2.3e-24	71	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke ++w+v+++++ HnHel Jcr4S00606.70 71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVAQWYVSQFSNVHNHELL 162 69******************8888.**************************************998766789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-22	71	162	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-9	294	350	IPR018289	MULE transposase domain
Pfam	PF04434	9.0E-8	508	543	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.928	508	544	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.9E-4	519	546	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence Send to blast
MAMKPSNNIW IRRQQCPCGD WKCYIKYEGD DQTPVSSQLV KNETPSTSSS TDVVFTPYVG 60 QIFKTDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH 120 PRDRKSVRCG CDAKLYLTKE IVDGVAQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD 180 QERILLLSKA GFPVNRIVKV LEIEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDAMLTEK 240 RENDTLELLE ACKAMVERDA DFAYDYTTDE NEKVENIAWS FGDSVRAYTV YGDVVVFDTT 300 YRSITYGLIL GVLFGMDNHG KAILFGCVLL QDESSHSFAW ALQYEDFKAE FDMLYHLESV 360 EDFEHQWNLL IARFGLASDK HIALLFSCRG SWSISYIRSF FLARTMTAEF SRTLDSFLKR 420 VLSGQTCLQV FFEQVGISAN FGNQNRDVMQ YMHIKTCMPI EEHARSVLTP YAFNVLQQEI 480 ILSMQYGIQE MADGSYLLRH YKKMDGEYLV YWMPAEEQIH CSCKEFERSG ILCRHSLRVL 540 SVKNYFQLPE KYFLLRWRQD HSLLPMDDQN AQSNSDECAE AFHSLAATLL TESLVSRERF 600 SYVHRELSGL VDHVRTMPPL MEEFSLNMAN NNISES

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence Send to blast

MAMKPSNNIW IRRQQCPCGD WKCYIKYEGD DQTPVSSQLV KNETPSTSSS TDVVFTPYVG  60
QIFKTDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVDGVAQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LEIEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDAMLTEK  240
RENDTLELLE ACKAMVERDA DFAYDYTTDE NEKVENIAWS FGDSVRAYTV YGDVVVFDTT  300
YRSITYGLIL GVLFGMDNHG KAILFGCVLL QDESSHSFAW ALQYEDFKAE FDMLYHLESV  360
EDFEHQWNLL IARFGLASDK HIALLFSCRG SWSISYIRSF FLARTMTAEF SRTLDSFLKR  420
VLSGQTCLQV FFEQVGISAN FGNQNRDVMQ YMHIKTCMPI EEHARSVLTP YAFNVLQQEI  480
ILSMQYGIQE MADGSYLLRH YKKMDGEYLV YWMPAEEQIH CSCKEFERSG ILCRHSLRVL  540
SVKNYFQLPE KYFLLRWRQD HSLLPMDDQN AQSNSDECAE AFHSLAATLL TESLVSRERF  600
SYVHRELSGL VDHVRTMPPL MEEFSLNMAN NNISES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020537948.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A067KDJ5	0.0	A0A067KDJ5_JATCU; Uncharacterized protein
STRING	cassava4.1_002824m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Entrez Gene	105641506

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]