PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00586.30

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 292aa MW: 34046.1 Da PI: 8.4703

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00586.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	90	113	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+k+F + +L +H + H Jcr4S00586.30 90 WRCGYCKKVFYDETYLDKHFDNrH 113 58*****************77666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	92	113	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MPNEIWGSVQ DGWSFFYFYG TLKQEQGHAH EVHCSRERSR AAWKIIEEQY FMPFVEKERY 60 HISTRCRLHP ENDLFRDQEE HKIHQDLHDW RCGYCKKVFY DETYLDKHFD NRHYDILNVV 120 AHYVKEVMPV ASWKSIGEFC LFAKVYIYAD GFMALSHGRC LADVCGALHC DLVMDSATRK 180 TKCNPAAAAK NKHLCESLAD SCFPANEGPS AHRLNELFLR QFCDAHTCNG RRKPFPRGGE 240 KQISVVYIVI SVMILMLLLL YYTFMYLYKR GIKTGTQGLR RISKGGQNKK SS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020534969.1	1e-164	uncharacterized protein LOC105633316 isoform X1
TrEMBL	A0A067LND0	1e-127	A0A067LND0_JATCU; Uncharacterized protein
STRING	POPTR_0001s36240.1	1e-125	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3216	13	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	7e-92	C2H2-like zinc finger protein