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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00533.20 | ||||||||
Common Name | JCGZ_03428 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 173aa MW: 20045.6 Da PI: 5.4438 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.2 | 2.5e-20 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G ++WktIa + g+ R++k+c++rw++yl Jcr4S00533.20 17 KGAWTAEEDQKLAQYIEVHGAKRWKTIATKAGLSRCGKSCRLRWLNYL 64 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 10 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.481 | 12 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-16 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-18 | 17 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.48E-22 | 18 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.32E-11 | 19 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-7 | 68 | 90 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MAPKKSSESS TKKFMNKGAW TAEEDQKLAQ YIEVHGAKRW KTIATKAGLS RCGKSCRLRW 60 LNYLRPNIKR GNISDEEEDL ILRLHKLLGN SKKINKEKKP ESSLPEENSQ EKTCDTIPTT 120 HQVMEEGIKE DALPDITLDE NELFNFSTQE SFDLEWVSKF LEVDEDLWLT ENR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-17 | 15 | 90 | 25 | 99 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034680 | 1e-136 | KM034680.1 Jatropha curcas clone JcMYB060 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012070134.2 | 1e-110 | transcription factor MYB114 | ||||
Swissprot | P10290 | 2e-33 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A067KUS8 | 1e-109 | A0A067KUS8_JATCU; MYB family protein | ||||
STRING | cassava4.1_024299m | 8e-73 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2148 | 32 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 3e-34 | myb domain protein 5 |