PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00532.20
Common NameGRAS16, JCGZ_25256, LOC105629176
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 557aa    MW: 62696.8 Da    PI: 4.6959
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00532.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS433.51.6e-13220055714374
           GRAS  14 sgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege 109
                    +g+ e a+al++ l++++s +gdp qR+aay++e+Laar+a+s++ lykal+++e +   ss++laa+++++ev+P++kf++++aN a+ ea++ge
  Jcr4S00532.20 200 KGNIEVADALINDLRQMVSIQGDPPQRIAAYMVEGLAARMASSGKFLYKALKCKEPP---SSDRLAAMQILFEVCPCFKFGFMAANGAMIEAFKGE 292
                    57899***************************************************9...9*********************************** PP

           GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203
                    +rvHi+Dfdi+qG Q+++L+q+La+++++ p lR+Tgv++pes+   +  l+ +g+rL+k+Ae+l+vpfef++ va++++ +++++L++ pgEal+
  Jcr4S00532.20 293 KRVHIVDFDINQGSQYITLIQTLANQSGKLPYLRLTGVDDPESVqrPTGGLKIIGQRLEKLAEALKVPFEFHA-VASKTSLVSPSMLECLPGEALV 387
                    ******************************************99888999***********************.7********************* PP

           GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                    Vn+++qlh+++desvs+ +erd++L++vksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+sl+a+lpres++r++vEr++l+r+ivn++a
  Jcr4S00532.20 388 VNFAFQLHHMPDESVSTVNERDQLLRMVKSLNPKLVTVVEQDVNTNTAPFLPRFVEAYNYYSAVFESLDATLPRESQDRVNVERQCLARDIVNIIA 483
                    ************************************************************************************************ PP

           GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ceg+er+er e ++kWr+r+++aGF++ p++ ++++ ++ l++++ ++ y+++ee g+l++gW++++L+++SaWr
  Jcr4S00532.20 484 CEGDERIERYEVAGKWRARMKMAGFTSCPMGPNIVDMIRKLIKQYCDR-YTLKEEMGTLLFGWEEKSLIVASAWR 557
                    **********************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.131161538IPR005202Transcription factor GRAS
PfamPF035145.6E-130200557IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MSLVRPAELS ATAYRNHKLY SLSRSNENSG LSSQMFGSDK RKNMYITNSD SCESYEKYFI  60
DSPTEELIHP SSSSVSGNSF HLQDVSSYQL RTGSGSSMTT QDAYNTFLSM RHRGTYQFNS  120
ELDYLEVQSP DAVDFDADEV RLKLQELERA LLDDNEDDDE DELFGNSQSM EIDGEWSESI  180
QNMMLHDSPK ESSSSDSNLK GNIEVADALI NDLRQMVSIQ GDPPQRIAAY MVEGLAARMA  240
SSGKFLYKAL KCKEPPSSDR LAAMQILFEV CPCFKFGFMA ANGAMIEAFK GEKRVHIVDF  300
DINQGSQYIT LIQTLANQSG KLPYLRLTGV DDPESVQRPT GGLKIIGQRL EKLAEALKVP  360
FEFHAVASKT SLVSPSMLEC LPGEALVVNF AFQLHHMPDE SVSTVNERDQ LLRMVKSLNP  420
KLVTVVEQDV NTNTAPFLPR FVEAYNYYSA VFESLDATLP RESQDRVNVE RQCLARDIVN  480
IIACEGDERI ERYEVAGKWR ARMKMAGFTS CPMGPNIVDM IRKLIKQYCD RYTLKEEMGT  540
LLFGWEEKSL IVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6120255634378Protein SCARECROW
5b3h_A4e-6120255633377Protein SCARECROW
5b3h_D4e-6120255633377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052650.0KM405265.1 Jatropha curcas GRAS16 protein (GRAS16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066104.10.0scarecrow-like protein 1
RefseqXP_012066106.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A067LEX60.0A0A067LEX6_JATCU; GRAS16 protein
STRINGcassava4.1_004272m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]