PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00529.110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | B3 | ||||||||
Protein Properties | Length: 723aa MW: 80669.5 Da PI: 6.1631 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.9 | 5e-20 | 581 | 677 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++r+W++++++ ++ks++y+l+ ++ +Fv+ ngL+egDf+v++ ++ +++ Jcr4S00529.110 581 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRTNGLQEGDFIVIY--SDvKCG 672 79*************************999999********7778*******99777777777777.********************..555898 PP ..EEE CS B3 91 elvvk 95 +++++ Jcr4S00529.110 673 KYLIR 677 87776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-27 | 575 | 677 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 2.88E-37 | 578 | 678 | No hit | No description |
SuperFamily | SSF101936 | 1.65E-22 | 579 | 672 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.56 | 580 | 682 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-19 | 580 | 682 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-16 | 581 | 676 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 723 aa Download sequence Send to blast |
MKGLHLHVED HENVTNPTTG FGTTVDAMEE EREIWLEREQ EDLLDVNNSS IFYDDYPALP 60 DFPCMSSSSS SSSTPAPVKA MASSSSSSSA SSSSSAASWA VLKSDAEEDV EKKIHDHNQH 120 HHYHNHQGQY DPLEPTAAAL SSTASMEILQ PPDQDVGVGC MSMMDNFGYM DLIENNDFLD 180 PSSIFQADEN FLEEFNTEQN LQQELQVQQR NEELAMETKS EVTQKQESGE GASDDLAMVF 240 LEWLKSNKET VSAEDLRKVK IKKATIECAA KRLGGGKAAM KQLLKLILEW VQTNHLQKRR 300 MKESSQDPLQ NPNPNLNCSN SIQPDQSNPC FSQSPWIAPP PYISDPAATG MQGFQPMVGY 360 MADPFVNGAS NMAGQSYPPP QPPQPPSSSD YQMLDSAQSW SASQFALASH YSPFPDNNLQ 420 PVPTHPNVFS GYGNQYPCQY LPTQVGDTLV RLGSSATKEA RKKRMARQRR FMSHHRNHNH 480 QNNNQQNQNQ NQNTVIDHHG RLGSDNITPA AQPPNPGNWV YWPAAVGGVA VSTTPVLPMD 540 APPVHTVDRP AMQSHQNHQR QVASDRRQGW KPEKNLRFLL QKVLKQSDVG NLGRIVLPKK 600 EAETHLPELE ARDGISIAME DIGTSRVWNM RYRFWPNNKS RMYLLENTGD FVRTNGLQEG 660 DFIVIYSDVK CGKYLIRGSE GETNRERKPE NKKARKSPKN SHASTPATVN GSSSNTNQTQ 720 TVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 6e-37 | 576 | 686 | 1 | 111 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 6e-37 | 576 | 686 | 1 | 111 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:19783648}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012085841.1 | 0.0 | B3 domain-containing transcription factor ABI3 isoform X2 | ||||
Swissprot | Q01593 | 1e-174 | ABI3_ARATH; B3 domain-containing transcription factor ABI3 | ||||
TrEMBL | A0A067K3N4 | 0.0 | A0A067K3N4_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_021232m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9448 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-161 | B3 family protein |