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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00522.30 | ||||||||
Common Name | JCGZ_01991 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NF-YB | ||||||||
Protein Properties | Length: 120aa MW: 13577.1 Da PI: 8.4741 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 137.4 | 4e-43 | 1 | 81 | 17 | 97 |
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 mk++lP nakisk+aket+qecvsefisfvtseas kc++e+ kt+ngdd++wa++ lGf+dy+epl+ yl++yre+eg++ Jcr4S00522.30 1 MKQILPPNAKISKEAKETIQECVSEFISFVTSEASGKCRKERGKTVNGDDICWAMGALGFDDYAEPLRRYLQRYREIEGDR 81 9******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 3.9E-19 | 1 | 55 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.93E-30 | 1 | 100 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.3E-40 | 1 | 100 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 7.7E-18 | 19 | 37 | No hit | No description |
PRINTS | PR00615 | 7.7E-18 | 38 | 56 | No hit | No description |
PRINTS | PR00615 | 7.7E-18 | 57 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MKQILPPNAK ISKEAKETIQ ECVSEFISFV TSEASGKCRK ERGKTVNGDD ICWAMGALGF 60 DDYAEPLRRY LQRYREIEGD RANQEKGSSS NNNTITEENR APLKFDPVDK RNSSRSSRPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 1e-32 | 1 | 76 | 17 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 1e-32 | 1 | 76 | 17 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012084241.1 | 2e-74 | nuclear transcription factor Y subunit B-4 | ||||
Swissprot | O82248 | 4e-42 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A067KYC6 | 1e-83 | A0A067KYC6_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_018746m | 2e-55 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF805 | 32 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 2e-44 | nuclear factor Y, subunit B5 |
Publications ? help Back to Top | |||
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