PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00516.20

Common Name

GRAS17, JCGZ_00787, LOC105632862

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 568aa MW: 63032.1 Da PI: 6.2372

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00516.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	424	1.3e-129	198	567	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l++lL++cA+a+++++++ ++l+++ + +s +g+p+qRl ay++e+L ar s++++y+al+++e + s++ l+++++++e++P+lkf+++ Jcr4S00516.20 198 LKQLLIACAKALAENNMNDFDRLIEKARGAVSISGEPIQRLGAYLVEGLVARKELSGNNIYHALRCREPE---SKDLLSYMQILYEICPYLKFGYM 290 689*************************************************9**********9...9****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 +aN aI ea ++e+++HiiDf+i qG+QW++LlqaLa++p+g+p++RiTg+++p ++ + + le++++rLa + e++++p+ef+ v d++ Jcr4S00516.20 291 AANGAIAEACKNEDCIHIIDFQIAQGTQWITLLQALAAKPGGAPHVRITGIDDPVNKhaRGDGLEAVHRRLAAISEKFNIPIEFHG-VPVFAPDVT 385 *************************************************99988999*********************.6888999 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 ++L+v+pgEalaVn+ lqlh+++desv+++++rd +L+lvksl+Pkvv++veqe+++n+++Fl+rf+e+l+yy a+f+s++++lpr+ ++ri vE Jcr4S00516.20 386 KDMLDVRPGEALAVNFPLQLHHTPDESVDVSNPRDGLLRLVKSLNPKVVTLVEQESNTNTTPFLTRFIETLDYYLAMFESIDVTLPRDWKDRIGVE 481 ********************************************************************************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++l+++ivnv+aceg+er+erhe ++kW++rl++aGF++ pls+++++ +++llr ++ + y++ e++g+++lgWk+r+L+s+SaW Jcr4S00516.20 482 QHCLAKDIVNVIACEGKERVERHELFGKWKSRLTMAGFRQSPLSSYVNSVIRSLLRCYS-EHYTLVEKDGAMLLGWKNRNLISASAW 567 ***************************************************9999.66*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.389	172	549	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.4E-127	198	567	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
MEHQLFGYGV TGAGLSYSSS YPIIPSIPNR LFESFTFDIG NSPSSHFSNQ FDCDTITTLS 60 DSQERYSSTE NPSGASPSCN SSLESSSYFH RLSPSLPQDA NSSQNIKHAL LQLETALMAP 120 DDDEGMTVAD ASLGESNRPQ TSAQRTRAWS QDRKDSIVIQ PHSSSVSRNK QSGEGAHVEK 180 HRKTIEEATL QSIPPGNLKQ LLIACAKALA ENNMNDFDRL IEKARGAVSI SGEPIQRLGA 240 YLVEGLVARK ELSGNNIYHA LRCREPESKD LLSYMQILYE ICPYLKFGYM AANGAIAEAC 300 KNEDCIHIID FQIAQGTQWI TLLQALAAKP GGAPHVRITG IDDPVNKHAR GDGLEAVHRR 360 LAAISEKFNI PIEFHGVPVF APDVTKDMLD VRPGEALAVN FPLQLHHTPD ESVDVSNPRD 420 GLLRLVKSLN PKVVTLVEQE SNTNTTPFLT RFIETLDYYL AMFESIDVTL PRDWKDRIGV 480 EQHCLAKDIV NVIACEGKER VERHELFGKW KSRLTMAGFR QSPLSSYVNS VIRSLLRCYS 540 EHYTLVEKDG AMLLGWKNRN LISASAWN

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

MEHQLFGYGV TGAGLSYSSS YPIIPSIPNR LFESFTFDIG NSPSSHFSNQ FDCDTITTLS  60
DSQERYSSTE NPSGASPSCN SSLESSSYFH RLSPSLPQDA NSSQNIKHAL LQLETALMAP  120
DDDEGMTVAD ASLGESNRPQ TSAQRTRAWS QDRKDSIVIQ PHSSSVSRNK QSGEGAHVEK  180
HRKTIEEATL QSIPPGNLKQ LLIACAKALA ENNMNDFDRL IEKARGAVSI SGEPIQRLGA  240
YLVEGLVARK ELSGNNIYHA LRCREPESKD LLSYMQILYE ICPYLKFGYM AANGAIAEAC  300
KNEDCIHIID FQIAQGTQWI TLLQALAAKP GGAPHVRITG IDDPVNKHAR GDGLEAVHRR  360
LAAISEKFNI PIEFHGVPVF APDVTKDMLD VRPGEALAVN FPLQLHHTPD ESVDVSNPRD  420
GLLRLVKSLN PKVVTLVEQE SNTNTTPFLT RFIETLDYYL AMFESIDVTL PRDWKDRIGV  480
EQHCLAKDIV NVIACEGKER VERHELFGKW KSRLTMAGFR QSPLSSYVNS VIRSLLRCYS  540
EHYTLVEKDG AMLLGWKNRN LISASAWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-61	205	568	25	378	Protein SCARECROW
5b3h_D	1e-61	205	568	25	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405276	0.0	KM405276.1 Jatropha curcas GRAS17 protein (GRAS17) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012070709.1	0.0	chitin-inducible gibberellin-responsive protein 1 isoform X1
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A067L3E6	0.0	A0A067L3E6_JATCU; GRAS17 protein
STRING	cassava4.1_004650m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4299	33	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-173	GRAS family protein

Link Out ? help Back to Top
Entrez Gene	105632862

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]