PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00511.40 | ||||||||
Common Name | JCGZ_23886 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NAC | ||||||||
Protein Properties | Length: 147aa MW: 17268.7 Da PI: 7.504 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113 | 3.3e-35 | 5 | 122 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +G+rF P+deelv+++Lk k+ g++ ++ + i+e+d+++vePwd+p+++ ++++ wyfF++r++ +g+r nr+t+ g+Wk+ gk+ ++++ Jcr4S00511.40 5 VGYRFCPNDEELVNHFLKLKMLGHDDQV-SRIPEIDVLTVEPWDIPSMMPNNSNdgVWYFFCRRNH---NGQRLNRTTNVGFWKTIGKTLKIKD-- 94 7************************999.77***************655443333599****9977...799****************999988.. PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyr 127 + +k++Lvfy++ a+ ++t+W+mhey+ Jcr4S00511.40 95 ---IATKQILVFYQNGANGRVRTNWIMHEYN 122 ...99********9999999**********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 35.549 | 3 | 141 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-23 | 5 | 122 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.14E-41 | 5 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MAGEVGYRFC PNDEELVNHF LKLKMLGHDD QVSRIPEIDV LTVEPWDIPS MMPNNSNDGV 60 WYFFCRRNHN GQRLNRTTNV GFWKTIGKTL KIKDIATKQI LVFYQNGANG RVRTNWIMHE 120 YNPTFDFPVQ SDYVLCKLRQ MPEDNNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-22 | 6 | 122 | 18 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM600731 | 0.0 | HM600731.1 Jatropha curcas NAC transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001295704.1 | 1e-108 | NAC domain-containing protein 4-like | ||||
Swissprot | F4JN35 | 6e-40 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | R4NEX0 | 1e-107 | R4NEX0_JATCU; NAC transcription factor 070 | ||||
STRING | cassava4.1_028212m | 5e-54 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.3 | 2e-42 | NAC transcription factor-like 9 |
Publications ? help Back to Top | |||
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