PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00446.20

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 431aa MW: 48023.6 Da PI: 7.0482

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00446.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107	1e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Jcr4S00446.20 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.014	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-31	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.32E-17	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.3E-23	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	5.2E-10	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	8.7E-25	147	193	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MYHHHQHQGK SVHSSSRMPI PPERHLFLQG GNGPGDSGLV LSTDAKPRLK WTPDLHERFI 60 EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQANS GSSKIGAAAV 120 TSDRMSEANV THMNNLSIGP QTNKSLHISE ALQMQIEVQR RLHEQLEVQR HLQLRIEAQG 180 KYLQAVLEKA QETLGRQNLG TMGLEAAKGL CPQQTQTTPP TDCSVDSCLT SCEGSQKEQE 240 IHNTGMGLRP YNGSALLESK DMAEEHMLHQ TELKWGEDNK MFLSPMGNNA ERRIFSSERS 300 SSDLSMRVGL QGESRNPCSG FSEGRYKERN DDDKFPDQTK KTADSVKLQN ENISPGYRLP 360 YFATKLDLNT HDEIDAASTC KQLDLNGDEA SDSDRTSEQE GDQHDNLLLP RSGQAARKQS 420 IQSKRNKLEQ E

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MYHHHQHQGK SVHSSSRMPI PPERHLFLQG GNGPGDSGLV LSTDAKPRLK WTPDLHERFI  60
EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQANS GSSKIGAAAV  120
TSDRMSEANV THMNNLSIGP QTNKSLHISE ALQMQIEVQR RLHEQLEVQR HLQLRIEAQG  180
KYLQAVLEKA QETLGRQNLG TMGLEAAKGL CPQQTQTTPP TDCSVDSCLT SCEGSQKEQE  240
IHNTGMGLRP YNGSALLESK DMAEEHMLHQ TELKWGEDNK MFLSPMGNNA ERRIFSSERS  300
SSDLSMRVGL QGESRNPCSG FSEGRYKERN DDDKFPDQTK KTADSVKLQN ENISPGYRLP  360
YFATKLDLNT HDEIDAASTC KQLDLNGDEA SDSDRTSEQE GDQHDNLLLP RSGQAARKQS  420
IQSKRNKLEQ E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012092686.1	0.0	myb-related protein 2
Refseq	XP_012092687.1	0.0	myb-related protein 2
Swissprot	Q9FK47	1e-144	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A067JLA4	0.0	A0A067JLA4_JATCU; Uncharacterized protein
STRING	XP_002525443.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	1e-136	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]