PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00409.30
Common NameJCGZ_20782
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 301aa    MW: 34746.8 Da    PI: 7.1578
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00409.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.13.6e-19754149
            NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                   +ppGfrFhPtdeelv++yL+kkv++k+++l +vik+vd+yk+ePwdL+ 
  Jcr4S00409.30  7 VPPGFRFHPTDEELVDYYLRKKVAAKRIDL-DVIKDVDLYKIEPWDLQG 54
                   69****************************.9***************83 PP
2NAM40.77.5e-13579579118
            NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgek 118
                    k+g+Wkatg+dk+++s +++l+g++ktLvfykgrap+g+k
  Jcr4S00409.30  57 KTGFWKATGRDKAIYS-RHSLIGMRKTLVFYKGRAPNGQK 95 
                    68**************.889******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-33595IPR003441NAC domain
PROSITE profilePS5100518.1927138IPR003441NAC domain
PfamPF023651.3E-15892IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNTFSHVPPG FRFHPTDEEL VDYYLRKKVA AKRIDLDVIK DVDLYKIEPW DLQGQQKTGF  60
WKATGRDKAI YSRHSLIGMR KTLVFYKGRA PNGQKVFKKR MPTMRKVGEY DSPSWYDDQV  120
SFMPELDSPR RIAQPYTTYL HHYPCKQEFE LQYNMSHDPF LQLPQLESPK IPQSAASANC  180
NSSVVPYGYD RNNNGSTLQS STLTQEEQVQ QSHHHPNLNS INYHNNGEQA VDQVTDWRVL  240
DKFVASQLSH EDASKEANYS NSAAFHVVEQ INMLSSESKR PEVVQEYAST STSSCQIDLW  300
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-2469614131Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7752960.0KC775296.1 Jatropha curcas NAC transcription factor 018 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087129.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-102NAC7_ARATH; NAC domain-containing protein 7
TrEMBLR4NFS90.0R4NFS9_JATCU; NAC transcription factor 018
STRINGXP_002532571.11e-180(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-101NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  4. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]