PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00396.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARF
Protein Properties Length: 387aa    MW: 42572.1 Da    PI: 8.262
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00396.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71e-23112213199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + ++
  Jcr4S00396.40 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVVAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAES 203
                    89****************************996555555..8************************************************..4489 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    + l+++++r+
  Jcr4S00396.40 204 GDLCLGIRRA 213
                    999***9996 PP
2Auxin_resp116.32.6e-38276359183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    aa  a+++++Fe vY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Jcr4S00396.40 276 AAALAANGQPFEAVYYPRASTPEFCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWfMGTVASVQVADPIRWPNSPWRLLQ 359
                    678899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-37104217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-30108223IPR015300DNA-binding pseudobarrel domain
CDDcd100173.73E-21111212No hitNo description
PfamPF023624.3E-22112213IPR003340B3 DNA binding domain
PROSITE profilePS5086312.872112214IPR003340B3 DNA binding domain
SMARTSM010194.5E-22112214IPR003340B3 DNA binding domain
PfamPF065077.2E-33276359IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MKELDKGLDP QLWHACAGSM VQIPPINSKV FYFPQGHAEH SQSPVDFSSS PRIHALILCR  60
VAAVKYLADS ETDEVYAKIS LFPLPNNELN FGEEMGICDN NNGNNTEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVVAKDVHGE VWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLR AESGDLCLGI RRAKRGTGGN GLDSSPPSGW TSTTNGSCIN  240
PYGGFSLFLK EDENKRNVGG LLRGRGRVRA EEVLEAAALA ANGQPFEAVY YPRASTPEFC  300
VKASSVRAAM RIQWCCGMRF KMAFETEDSS RISWFMGTVA SVQVADPIRW PNSPWRLLQE  360
NDSFSRLVCS GSGRTAVVVA ANDHRSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-73835951367Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012064809.10.0auxin response factor 10
SwissprotQ653H71e-175ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A067L6E10.0A0A067L6E1_JATCU; Auxin response factor
STRINGcassava4.1_004716m0.0(Manihot esculenta)
STRINGXP_002529941.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2397722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.11e-175auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]