PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00351.50
Common NameJCGZ_19841, LOC105644060
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 400aa    MW: 44910.6 Da    PI: 6.7658
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00351.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.13e-52151431128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLp + ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+
  Jcr4S00351.50  15 MLPGFRFHPTDEELVGFYLKRKIQQRSLPI-ELIKQVDIYKYDPWDLPiELATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 109
                    579***************************.89***************666677999**************************************9 PP

            NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  Jcr4S00351.50 110 dGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 143
                    56667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-5613174IPR003441NAC domain
PROSITE profilePS5100556.52415174IPR003441NAC domain
PfamPF023651.6E-2517143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEEKSTDLDK MDDVMLPGFR FHPTDEELVG FYLKRKIQQR SLPIELIKQV DIYKYDPWDL  60
PIELATTGEK EWYFYCPRDR KYRNSARPNR VTGAGFWKAT GTDRPIYSSD GTKCIGLKKS  120
LVFYRGRAAK GIKTDWMMHE FRLPSLSEPS PPKKLLDKSL PPNDAWAICR IFKKTNSMAQ  180
RALNHSWMSQ IPDTTASNIL NQGVQRCTQF SPENISCTTE IASVFPICSN NDLQQASSAS  240
FSAIDLSSYN KPMTPTSVDK PSLFPLTNGD LLHSNFMFSP LEISGHTKCT VDASSSSMLL  300
NPALIGDISK VSESINFEGS HNQQFNGFAI SLSQDTQANM GAEEDEANLR KNSNGIYDNN  360
QWGTVRSIGF PFSLPSNLPW DSPPCPSEMS STYSTNKCYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-521717717171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753090.0KC775309.1 Jatropha curcas NAC transcription factor 031 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084694.10.0protein FEZ
SwissprotQ9ZVH01e-102FEZ_ARATH; Protein FEZ
TrEMBLR4N5L20.0R4N5L2_JATCU; NAC transcription factor 031
STRINGcassava4.1_021102m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.18e-99NAC family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]