PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00346.80
Common NameGRAS15, JCGZ_26073, LOC105648434
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 632aa    MW: 68938.6 Da    PI: 6.5195
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00346.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.91.4e-1122626322374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++ Ll++A a+ +g+   a ++L+r+s+ ++p+g++ +Rl  y+  AL++r+++     ++a pp ++    s+e+la+++l++e+sP++k+++++
  Jcr4S00346.80 262 KQSLLDAASAIYEGKIDVAGEILTRVSQVSNPRGNSEHRLMEYMSMALKSRVNS-----VDAPPPVAE--LYSKEHLASTQLLYELSPCFKLGFMA 350
                    578***************************************************.....444444443..359*********************** PP

           GRAS  98 aNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                    aN aIle +  +    +  H+iDfdi+qG Q+++Ll+aL++R +g+p +++iT+++++  ++ke+l+++g+ L+++Ae++gv+++fnv v+ +l +
  Jcr4S00346.80 351 ANLAILEVAVDQpnsgNGFHVIDFDIGQGCQYMNLLHALSERLNGKPaTVKITAIADNGGEEKERLKAVGSTLSQLAEQFGVSLRFNV-VSCKLGE 445
                    *******887776777778************************77666*********8878**************************9.7999*** PP

           GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                    l+ e+L ++p+E laVn+ ++l+r++desvs+e++rde+L+ vk+l P+vv++veqe+++n+++F++r+ ea++yy alfds+e+++ r+++er+k
  Jcr4S00346.80 446 LSRESLGCEPEEPLAVNFGFNLYRMPDESVSTENPRDELLRRVKGLGPRVVTLVEQEMNTNTAPFMARVNEACSYYGALFDSIESTVQRDNSERVK 541
                    ************************************************************************************************ PP

           GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    vE+  lgr++ n vaceg++r+er+e ++kWr+r+++aGF+  p+s+++a+++k+ l+     + g++v+ee+g +++gW++++L+++SaWr
  Jcr4S00346.80 542 VEEG-LGRKLANSVACEGRDRVERCEVFGKWRARMGMAGFELKPMSQSVAESMKARLNSGTrvNPGFTVKEENGGVCFGWMGKTLTVASAWR 632
                    ****.*************************************************99987665789**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.719235610IPR005202Transcription factor GRAS
PfamPF035144.8E-110262632IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MASGFSGGGA DFYSGMAGRS ITSMNPNNPS QPGYRNQLSQ IFLDPTSQIA QHRATSTNLT  60
TQSLIGKRTP ADFQAQQHQQ QLQQPNLNPA LNGLLLRSVK PRMYQHTSPI STLSPIEFST  120
NISPELPPLS QRYGMPLLQQ LRPQPINLGP GHTIHSANVA SHALPYMNTL QNQNRGGGSI  180
AGQESKKKMM NRLQELEKQL LDDNEEEEGD AVSVITNSNS EWSETIQNLI TSSSPNPISP  240
SPTSSSSSSS TSVTTPVPNC SKQSLLDAAS AIYEGKIDVA GEILTRVSQV SNPRGNSEHR  300
LMEYMSMALK SRVNSVDAPP PVAELYSKEH LASTQLLYEL SPCFKLGFMA ANLAILEVAV  360
DQPNSGNGFH VIDFDIGQGC QYMNLLHALS ERLNGKPATV KITAIADNGG EEKERLKAVG  420
STLSQLAEQF GVSLRFNVVS CKLGELSRES LGCEPEEPLA VNFGFNLYRM PDESVSTENP  480
RDELLRRVKG LGPRVVTLVE QEMNTNTAPF MARVNEACSY YGALFDSIES TVQRDNSERV  540
KVEEGLGRKL ANSVACEGRD RVERCEVFGK WRARMGMAGF ELKPMSQSVA ESMKARLNSG  600
TRVNPGFTVK EENGGVCFGW MGKTLTVASA WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-422636326375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052750.0KM405275.1 Jatropha curcas GRAS15 protein (GRAS15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090206.10.0scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A067JEL20.0A0A067JEL2_JATCU; GRAS15 protein
STRINGXP_002513664.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]