PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00332.40 | ||||||||
Common Name | JCGZ_11753, LOC105640657 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | SBP | ||||||||
Protein Properties | Length: 555aa MW: 60430.2 Da PI: 8.0892 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.8 | 2.8e-42 | 177 | 252 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ keyh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q Jcr4S00332.40 177 CQVYGCNKDLSSSKEYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 252 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.2E-33 | 172 | 238 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.505 | 174 | 251 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.34E-39 | 175 | 254 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.0E-32 | 177 | 250 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MQPWSYVHGG KDIVSRETIS SSDTIAKSRN ALLGWDLKTA SFGNNMVISS QQAIENQNFG 60 HLSYQEMMGK QLPDNSIRVS LSSEVDVGKI INPFIVNNTN SFSLEVESTS SRLSSSVMDS 120 NSRDSSFIDL KLGRFGDPTT DAQNSRTSKG ASILSSSDSS NPPKRMRPGV NSHTAYCQVY 180 GCNKDLSSSK EYHKRHKVCE VHSKTAKVIV NGIEQRFCQQ CSRFHLLAEF DDGKRSCRKR 240 LAGHNERRRK PQVGLHAGRT GRLIQSYNGF GTGRFHGTAS FICQDILPSG PLHPEKYGTN 300 NWCRQIKVED GSNFSPLSSI PTSGYLLSKF LFPSNNLNKA FLTFNDNEAT PTTGSIFNAS 360 SNRYPHEMGG SIFYSRSLVQ DNLMGNEDFT TFNAVSTIQG LSGITHSGCA LSLLSSHSNN 420 FSGHSSGMSI ASPLVVPGSN THYSVSQVSE KLIGVSSQAS MSGVPNKFSS GTSSAEGSHL 480 GSILIPDGSD AINFDVTDGI YQGSDFMNAK GSLSCEDGTT VDLLQLSSQL QRVEHQKQSM 540 QVKQENDALC WPHIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-30 | 177 | 250 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012080418.1 | 0.0 | squamosa promoter-binding-like protein 6 isoform X2 | ||||
TrEMBL | A0A067K5H8 | 0.0 | A0A067K5H8_JATCU; Uncharacterized protein | ||||
STRING | XP_002514625.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 4e-46 | SBP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105640657 |
Publications ? help Back to Top | |||
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