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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00313.60 | ||||||||
Common Name | JCGZ_22505 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 10407.6 Da PI: 4.2857 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.2 | 7.7e-08 | 8 | 52 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rW+ eE +++ ++ l ++ W+++a+ ++ ++ ++k+++ + Jcr4S00313.60 8 SRWSWEENKIFETNFEFLIKEEWEKVAALLP-DKSVDDVKLHYEHL 52 59*****************************.***********765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.249 | 2 | 53 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-4 | 3 | 54 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-5 | 6 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.84E-8 | 8 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.08E-5 | 9 | 53 | No hit | No description |
Pfam | PF00249 | 1.5E-5 | 9 | 50 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MAQKAKPSRW SWEENKIFET NFEFLIKEEW EKVAALLPDK SVDDVKLHYE HLLEDLKLIG 60 SGHVPLPKYV EEEEEEEEED GQVKSDHL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432437.1 | 3e-14 | PREDICTED: protein RADIALIS-like 4 | ||||
TrEMBL | A0A067JSL3 | 4e-55 | A0A067JSL3_JATCU; Uncharacterized protein | ||||
STRING | XP_002531923.1 | 2e-20 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17533 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 2e-13 | MYB family protein |
Publications ? help Back to Top | |||
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