PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00301.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 122aa    MW: 14160.3 Da    PI: 7.683
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00301.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.7e-12131001092
                    HHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
             B3  10 vlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                     l+ +++v+p +f+++    +++ e +  +   d++g++W+++l +  +++++ ++  + W  Fvk  gL+egD+v F+ +++   ++ 
  Jcr4S00301.20  13 DLE-HQFVVPIDFLNQPavrDENGELKENIPSFDRDGQEWRFRLAIrkDGHPKPTLTPASWHPFVKHFGLQEGDVVRFYIIRNeGARKI 100
                    333.45999****96669984444566689999***********76445555559999*********************9998555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.2773106IPR003340B3 DNA binding domain
CDDcd100172.67E-114102No hitNo description
Gene3DG3DSA:2.40.330.106.1E-135104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-12596IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-915102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MDILCEKSLT KTDLEHQFVV PIDFLNQPAV RDENGELKEN IPSFDRDGQE WRFRLAIRKD  60
GHPKPTLTPA SWHPFVKHFG LQEGDVVRFY IIRNEGARKI RIQAWREIVI LGTLVLAELG  120
KV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067L1V48e-81A0A067L1V4_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15290312