PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00299.40

Common Name

JCGZ_17039, LOC105641299

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB_related

Protein Properties

Length: 210aa MW: 24527.4 Da PI: 7.9679

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00299.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.2e-17	35	80	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l Jcr4S00299.40 35 RGGMSQEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 80 6779****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-9	15	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.17E-20	16	84	IPR009057	Homeodomain-like
PROSITE profile	PS50090	4.089	16	29	IPR017877	Myb-like domain
PROSITE profile	PS51294	25.143	30	84	IPR017930	Myb domain
SMART	SM00717	2.4E-16	34	82	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-15	35	80	IPR001005	SANT/Myb domain
CDD	cd00167	3.34E-12	38	80	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-21	44	81	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MENKQVKPRV KKGLMRGGKS CRLRWKNYLR PNIKRGGMSQ EEEDLIIRMH KLLGNRWSLI 60 AGRLPGRTDN EVKNYWNTHL NKRCHPGKRQ GTDSNIHQNG NGNGTGDDDE NKTKRQCISQ 120 VCSSSTKSIP EELDEKKKEK EERTVTDTWI QDAQSWNYYI ESPMMQSNND AFFFDDEPII 180 AYWDSFVWFE SFGYNGEEIF SHADLQSLMP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-19	16	84	40	108	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM034690	0.0	KM034690.1 Jatropha curcas clone JcMYB070 MYB family protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012081207.1	1e-151	transcription factor MYB82
TrEMBL	A0A067K2D3	1e-150	A0A067K2D3_JATCU; MYB family protein
STRING	cassava4.1_027214m	7e-96	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13545	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52600.1	3e-43	myb domain protein 82

Link Out ? help Back to Top
Entrez Gene	105641299

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]