PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00295.30 | ||||||||
Common Name | JCGZ_21218, LOC105649333 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 80aa MW: 9000.82 Da PI: 5.8775 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.1 | 6.3e-11 | 28 | 70 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++++E+ l+++ +++ G + W++Ia +++ gRt++++ +w Jcr4S00295.30 28 RPDFSEDEESLIARMFNLVGER-WSLIAGRIP-GRTAEEIEKYWT 70 5679******************.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.131 | 23 | 73 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.8E-8 | 27 | 75 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.81E-9 | 28 | 73 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.5E-10 | 29 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.35E-8 | 31 | 69 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-12 | 31 | 71 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MGDQNNKSSH ATSEDTKTKG TIKGQGSRPD FSEDEESLIA RMFNLVGERW SLIAGRIPGR 60 TAEEIEKYWT SRYSSSSTER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012091344.1 | 9e-53 | transcription factor CPC | ||||
Swissprot | Q9LNI5 | 2e-16 | ETC1_ARATH; MYB-like transcription factor ETC1 | ||||
TrEMBL | A0A067JAH2 | 2e-51 | A0A067JAH2_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_026343m | 5e-32 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2692 | 31 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01380.1 | 8e-19 | MYB_related family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105649333 |