PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00291.120
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 981aa    MW: 108700 Da    PI: 6.8745
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00291.120genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.9e-18387486198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  e++
  Jcr4S00291.120 387 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISHPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMRLQAGDIVTFSRLE-PEGK 479
                     89**************************555666777***************9989999999***9.********************766.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  Jcr4S00291.120 480 LVMGFRK 486
                     7777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-30383495IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.05E-19384486IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-22385486No hitNo description
PfamPF023629.4E-16387486IPR003340B3 DNA binding domain
SMARTSM010197.1E-20387488IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293387488IPR003340B3 DNA binding domain
PROSITE profilePS5105012.478642712IPR011124Zinc finger, CW-type
PfamPF074961.5E-9647680IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 981 aa     Download sequence    Send to blast
MSTAAPSSSS SSASKKCFNL DCTDFKSRKG WRLRSGEFAE LCDRCACGSS SLLILQINYL  60
PISHDGPVER MTNCCQRLVE YVRLRREGNI PSANDKELLI EEKPEYSSYN KTCWREKKIV  120
LLMEEGRFCE IFHMNATGWR CCESCGKRVH CGCIVSNHAF MLLDAGGIEC MACARKNVVL  180
TSSTAWPPSI FYNSPLSERF KDVSVKNWSQ LAGTLYEIDR LHAGERSTLP SLEKGRIEDF  240
SERLINGNLK LGTRARDIVE NGNAGTSSEE KPGSCLGISH QPSLREDPSA PQFGMPLPFT  300
SLNEPNGQIG GSGTPLRQPA PPLLAKQFHG NLHGGVDSSP DTHIRNGRPR ADARARSQLL  360
PRYWPRFTDE ELQQISGNSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE AYFPPISHPE  420
GLPLKVQDSK GKEWIFQFRF WPNNNSRMYV LEGVTPCIQN MRLQAGDIVT FSRLEPEGKL  480
VMGFRKASTA PSSDQDNDTS KTSNGLSANR DVSTAKPFMA EFADPSPWSK VDKSGYIAKE  540
VLEAKSSIKK RKSSTLGSKS KRLRIENEDM IELKLTWEEA QGLLRPPPDH IPSVVVIEGF  600
ELEEYEDAPI LGKPTVFATD NSGLDLLFFV AFSIEENPCY CTCQKIQWVQ CEDCFKWRKL  660
PADALLPSKW TCSSNSWDQG RVNLSIEIVF TSLDDFCFYD GSFCSAAQEL TAEQLEDLLP  720
SCHIAASKKM KASKQDVDNV EALEGLDTLA NLAILGENEA LPASSQATTK HPRHRPGCSC  780
IVCIQPPSGK GPKHKQTCTC NVCQTVKRRF KTLMMKREKK QSEKEAETTR KKQQQALPEK  840
LLDDDPSPST NTESSSPDKK KMISEGSDDD PNKTKSSTSP FKGQIDLNIQ PEREEELSPG  900
SDSGSMMKML QDATERYLRQ HRLLVSDDDN NISSGNQVLA GHEMGEKISN GVVLGNGHQD  960
SDKDHPATFS VKVSATSPAT G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-643654902127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091508.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067JDQ20.0A0A067JDQ2_JATCU; Uncharacterized protein
STRINGcassava4.1_001569m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-166HSI2-like 1