PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00285.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 433aa    MW: 48873.6 Da    PI: 6.4135
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00285.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS388.86e-119494122361
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl.fsevsPilkfsh 95 
                     +lL++cAe +s++d+++a++lL+ ls  +s++gd+ +Rl + f++AL+ rl++  +    ++ ++s+t++++s+e+l++  l +++++P+++fsh
  Jcr4S00285.10  49 HQLLISCAELISQSDFSAAHRLLSVLSSASSSYGDSRERLLHQFVKALSFRLSHrGGVDAGSS-SSSSTASRESEEALQSCYLsLNQITPFIRFSH 143
                    689**************************************************9222233333.33333334455555554446************ PP

           GRAS  96 ltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.r 185
                    ltaNqaIlea+e g++++HiiDfdi++G+QWp+L+qaLa+R+     +pp+lRiTg g+    + + l++tg+rL kfA++lg++f+f++l+ + +
  Jcr4S00285.10 144 LTANQAILEAIEvGQQAIHIIDFDIMHGVQWPPLMQALAERStntlYPPPMLRITGTGH----DLNILHRTGDRLFKFAQSLGLKFQFHPLLLNnD 235
                    ***********95569**************************888888***********....9***************************55524 PP

           GRAS 186 ledl...eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                     ++l    ++++ + p+EalaVn+v+ lhrll+e+         +L+ +k l+Pkvv+v+e+ea+hn++ F++rfleal++y+a+fdslea+++++
  Jcr4S00285.10 236 HSALplhLPSAITILPNEALAVNCVFYLHRLLKEDSRNLR---IFLHKIKALNPKVVTVAEREANHNHPFFFQRFLEALDHYTAIFDSLEATVAPN 328
                    4444333678899999****************76655444...8**************************************************** PP

           GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                    s+er  vE+ ++g+ei+++va eg+errerhe++e W++ l+++GF++vpls +a +qaklllr ++  +gy+++  ++s++l 
  Jcr4S00285.10 329 SRERLAVEQIWFGKEIMEIVAGEGEERRERHERFEAWEMILRSSGFSNVPLSPFALSQAKLLLRLHYpCEGYHLQLLNNSFFLV 412
                    ******************************************************************************999974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.9222404IPR005202Transcription factor GRAS
PfamPF035142.1E-11649412IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MLGSLNSSSS HDQEEEPEPL DLHLPHPPPP PPLPPSLPLL PPPSSTHMHQ LLISCAELIS  60
QSDFSAAHRL LSVLSSASSS YGDSRERLLH QFVKALSFRL SHRGGVDAGS SSSSSTASRE  120
SEEALQSCYL SLNQITPFIR FSHLTANQAI LEAIEVGQQA IHIIDFDIMH GVQWPPLMQA  180
LAERSTNTLY PPPMLRITGT GHDLNILHRT GDRLFKFAQS LGLKFQFHPL LLNNDHSALP  240
LHLPSAITIL PNEALAVNCV FYLHRLLKED SRNLRIFLHK IKALNPKVVT VAEREANHNH  300
PFFFQRFLEA LDHYTAIFDS LEATVAPNSR ERLAVEQIWF GKEIMEIVAG EGEERRERHE  360
RFEAWEMILR SSGFSNVPLS PFALSQAKLL LRLHYPCEGY HLQLLNNSFF LVCMHGESMD  420
EFWHEGINEH SFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-60453911340GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052540.0KM405254.1 Jatropha curcas GRAS21 protein (GRAS21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081869.20.0scarecrow-like protein 18
SwissprotQ9ZWC51e-125SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A067K0600.0A0A067K060_JATCU; GRAS21 protein
STRINGcassava4.1_022846m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129262133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-108GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]