PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00284.90
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 688aa    MW: 74302 Da    PI: 5.5482
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00284.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-08250278129
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                      r++W+  Ed+ l+ av+++G g+W+ I r
    Jcr4S00284.90 250 RKPWSDSEDLELIAAVQKYGEGNWANILR 278
                      789************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.856245294IPR017930Myb domain
SuperFamilySSF466896.73E-9246291IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-10246290IPR009057Homeodomain-like
PfamPF002499.5E-7250289IPR001005SANT/Myb domain
CDDcd116606.85E-9251292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MIEKSKKPKK GIISEEDIST LLQRYTANTV LALLQEVAQF EGVKIDWNEL VKKTTTGISN  60
VREYQMLWRH LAYRHALLDK LHDGAQPLVC FSTLPPIIDD DSDLEYELDV FPDVSTEAST  120
EAAACVKSIC LTPGEWDKSL RFFLASWLLP TIENVEWQNN FTFVKLVLIA SGLPSDSTHP  180
NSTTVEAPLT INIPNGKPCR FTSENLQPAI MKGVNITVPV SVQKQPLPAV TSAEGLDANG  240
SGSGVPRRKR KPWSDSEDLE LIAAVQKYGE GNWANILRSE VKWDRTASQL SQVVFLTSVD  300
VHIIALVVNF PCLSLDGSWK SLGFALCGEF CESSNIVGHF EILLARFFFA FVLLIILVCL  360
KQRWAIIRKR QGTSNLGGNT SSVQLIEEQR AARHAMNMAL DPPVKNTFTN SSGETSSAQH  420
RFQYPFATKS SVMGTLVPGA KPQVKMSNLV KPDIGSDLVR AAAVAAGARI ATQSDAANLL  480
KAAQAKNAVH IMSSSGSSIK PALPAGSSGN PEAYPNVRAA SLSTQAAASP SGAHPALGKA  540
CLPTTQQAPS TSGAALNLLS EQANTELPPK QDSDNAKHVE TLSKDVAIEH GEEKSAVSQN  600
QDAEVKTEVD VEQSNASPNL EVAESDKMDV LENQAEPHQN SKSDSIKGLS IVKDENRSAI  660
RENGNSQIIS AKLADLPSME TDECSEKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245251PRRKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068022.10.0uncharacterized protein LOC105630713
TrEMBLA0A067KZ500.0A0A067KZ50_JATCU; Uncharacterized protein
STRINGcassava4.1_004108m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.14e-61MYB_related family protein