PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00260.70
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family CO-like
Protein Properties Length: 355aa    MW: 39770.4 Da    PI: 6.5002
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00260.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.9e-07447340
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    r C+ ++ + + l+C+ ++  lC +C  e H+       Ht++
  Jcr4S00260.70  4 SRLCDYCNVNTALLYCRADSAKLCISCDREVHETnklfskHTRS 47
                   689*****999*********************777888888875 PP
2zf-B_box28.24e-094891442
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     C+ ++  ++++fCe+ ++ lC++C  e H +      H+++p+
  Jcr4S00260.70 48 LLCDACDASPASIFCETEHSVLCQNCDWERH-SlsvssvHNRRPI 91
                   57*****************************.6588888888776 PP
3CCT62.61.3e-21311353143
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                    R+ a++RYkeKrktR+++K+irYesRK++AesR R+KGrF+k 
  Jcr4S00260.70 311 RDSAISRYKEKRKTRRYDKHIRYESRKVRAESRTRIKGRFAKI 353
                    899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-12249IPR000315B-box-type zinc finger
PROSITE profilePS5011910.31249IPR000315B-box-type zinc finger
CDDcd000219.10E-7549No hitNo description
PROSITE profilePS5011910.9364591IPR000315B-box-type zinc finger
PfamPF006436.4E-74891IPR000315B-box-type zinc finger
CDDcd000211.66E-64991No hitNo description
SMARTSM003360.0665091IPR000315B-box-type zinc finger
PfamPF062031.9E-16311352IPR010402CCT domain
PROSITE profilePS5101714.813311353IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGESRLCDYC NVNTALLYCR ADSAKLCISC DREVHETNKL FSKHTRSLLC DACDASPASI  60
FCETEHSVLC QNCDWERHSL SVSSVHNRRP IEGFSGCRSV SELVSIWGFE DIGDKKALFL  120
NEDSGLVGSG LDGSGFGDGY SDLLVWESPA VSIDDLIVAS LALTPSDSFH IKLLEYAHAC  180
NYLSHSPESC QNRNAVCGRH KEEILGQLRE LARSEPDSNW KNPHTEPINV FQSSAEGQNR  240
QLQNMHTGCE ENVFQWISDP GEAGVQVSVP CTAARSDLEE NFIVLDKLVN GSHGATRVPK  300
IGSHELNSQE RDSAISRYKE KRKTRRYDKH IRYESRKVRA ESRTRIKGRF AKIDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082670.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A067K7550.0A0A067K755_JATCU; Uncharacterized protein
STRINGXP_002520678.11e-163(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-84B-box type zinc finger protein with CCT domain