PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00238.140
Common NameJCGZ_14376
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 649aa    MW: 72686.1 Da    PI: 5.4429
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00238.140genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07544593147
                      TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      +++WT+eE+++++  v++ ++      W+   + ++ +R +++++s+++++
   Jcr4S00238.140 544 KLSWTEEEEKKFKAIVRLNPPSldkcFWDEMFKFFP-TRRREDLVSYYFNV 593
                      689*****************88**************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010146.8E-1245135No hitNo description
PROSITE profilePS5101116.30248139IPR001606ARID DNA-binding domain
SMARTSM005011.7E-1449140IPR001606ARID DNA-binding domain
SuperFamilySSF467741.57E-1558140IPR001606ARID DNA-binding domain
PfamPF013881.7E-1068135IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.604.1E-1473153IPR001606ARID DNA-binding domain
PROSITE profilePS511568.668445568IPR000949ELM2 domain
SMARTSM011892.2E-4447498IPR000949ELM2 domain
SMARTSM007172.7E-4543596IPR001005SANT/Myb domain
PfamPF002496.9E-6545593IPR001005SANT/Myb domain
CDDcd001672.67E-5546594No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016575Biological Processhistone deacetylation
GO:0048235Biological Processpollen sperm cell differentiation
GO:0000118Cellular Componenthistone deacetylase complex
GO:0048555Cellular Componentgenerative cell nucleus
GO:0048556Cellular Componentmicrosporocyte nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MAGWSMIAGD RCALDSSKTP QKELHQEGFL DGLDPFSQLS RLTTDSDAKL RCQFDNCLKS  60
LRKEICVLDS AFPPMLGDGQ PVDLLKLFLL VREKGGYDVV SKNGLWSVVA QESGLGLNIA  120
SSVKLVYAKY LDTLEKCLER VVDDKNSKTK SSVSSPNVGG ISMELRSEFK GLLSDIPEWK  180
SVLNVSAEVD PNGDEKCIVD DEESVHIGTG KSGVDFVDVG KLGYNVAKSS AIDSFSDGDK  240
KCKDDQENLR SNLTSLNAFD EDEVKSMVVE IEDDKKCENG DENDVIVLDS DAVKDSFSCL  300
KRKRKSVCRV LNWITGVARN PCDPLVDSLP ESSKWGSYGN EELWKQVLLA REALFLKGNV  360
DSGAEQKNRK MHPCMYDDPV GSAYNFRERL KCTKKLLHGK TASQGEACSQ LSSSTAETES  420
DSCTKKICDG HSSTKYSVID IPVEKPIPLG PDFQAEVPEW TGMVSQSDSK WVGTRVWPPE  480
KIDNRLVIER EPIGKGRQDS CGCEVPKSTE CVRFHSTEKR MRTRRELGIA FLHWKFDKMG  540
EDVKLSWTEE EEKKFKAIVR LNPPSLDKCF WDEMFKFFPT RRREDLVSYY FNVFLLQRRA  600
HQNRFTPNNI DSDDDESECG LIANSSGHEA PKSPGSLLYS AKKPRKNAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538494.10.0AT-rich interactive domain-containing protein 1 isoform X1
TrEMBLA0A067K8K60.0A0A067K8K6_JATCU; Uncharacterized protein
STRINGcassava4.1_003489m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43731724
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]