PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00230.100

Common Name

JCGZ_02215, LOC105632026

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

CPP

Protein Properties

Length: 689aa MW: 75362 Da PI: 6.2495

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00230.100	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.2	5.1e-16	393	431	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk Jcr4S00230.100 393 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 431 589**********************************96 PP
2	TCR	50.6	3.7e-16	478	516	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Jcr4S00230.100 478 RHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNA 516 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.6E-17	392	433	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.486	393	518	IPR005172	CRC domain
Pfam	PF03638	1.3E-11	395	430	IPR005172	CRC domain
SMART	SM01114	2.9E-17	478	519	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.2E-11	480	516	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence Send to blast
MDTPKKTQIT TPLSKFEDSP VFNYINSLSP IKPVKSIHVT QTFHSLSFAS LPSIFTSPHV 60 TSHKESRFLR RHNYSDQSKP EISSENGNKV GSNEGDVAQL YDDSRELQEN FDAGVSIAEA 120 SIEPPSEHAE FAIELPRRFK YDCGSPECDT MSCCGPHVDC MSELAGISAL EVSQKCADMH 180 LQGIHPTKRK KEAADCDWES LISDTADLLI FNSPIDSEVF KGLMQKSLDA GGSYPTPLDE 240 RLDNLTANNN PSEEVDNEVG MPIRIRVVSN LHRGMRRRCL DFEVVGAGRK NLVILQGVFL 300 PGIGLHLNAL AITSKDSKNV KNETLSSGIS LPSSVASFHS PTADEELNES LALVSVERDT 360 EPTENGVPPG EDVSQASASL VAEERKLEGE SEACKRCNCK KSKCLKLYCE CFAAGVYCIE 420 PCSCQECFNK PIHEDTVLAT RKQIESRNPL AFAPKVIRSS ESATEIGDEP SKTPASARHK 480 RGCNCKKSSC LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSAPMETEA EPEDETDGDE 540 KNGVDRISQK TEIQNNEEQN PNSALPMTPL PLCRPLLQLP FSSKGKPPRS FLGIGSSSGL 600 YTAQKYGKPN ILRPQTKFEK QLPTVPDDDM PEMLRGNYTP STGIKTSPNS KRISPPHSIL 660 GSSPGRRSGR KLILQSIPSF PSLTPPPLK

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence Send to blast

MDTPKKTQIT TPLSKFEDSP VFNYINSLSP IKPVKSIHVT QTFHSLSFAS LPSIFTSPHV  60
TSHKESRFLR RHNYSDQSKP EISSENGNKV GSNEGDVAQL YDDSRELQEN FDAGVSIAEA  120
SIEPPSEHAE FAIELPRRFK YDCGSPECDT MSCCGPHVDC MSELAGISAL EVSQKCADMH  180
LQGIHPTKRK KEAADCDWES LISDTADLLI FNSPIDSEVF KGLMQKSLDA GGSYPTPLDE  240
RLDNLTANNN PSEEVDNEVG MPIRIRVVSN LHRGMRRRCL DFEVVGAGRK NLVILQGVFL  300
PGIGLHLNAL AITSKDSKNV KNETLSSGIS LPSSVASFHS PTADEELNES LALVSVERDT  360
EPTENGVPPG EDVSQASASL VAEERKLEGE SEACKRCNCK KSKCLKLYCE CFAAGVYCIE  420
PCSCQECFNK PIHEDTVLAT RKQIESRNPL AFAPKVIRSS ESATEIGDEP SKTPASARHK  480
RGCNCKKSSC LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSAPMETEA EPEDETDGDE  540
KNGVDRISQK TEIQNNEEQN PNSALPMTPL PLCRPLLQLP FSSKGKPPRS FLGIGSSSGL  600
YTAQKYGKPN ILRPQTKFEK QLPTVPDDDM PEMLRGNYTP STGIKTSPNS KRISPPHSIL  660
GSSPGRRSGR KLILQSIPSF PSLTPPPLK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-17	397	515	14	120	Protein lin-54 homolog
5fd3_B	1e-17	397	515	14	120	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012069685.1	0.0	protein tesmin/TSO1-like CXC 2 isoform X2
Swissprot	F4JIF5	1e-173	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	A0A067KVT5	0.0	A0A067KVT5_JATCU; Uncharacterized protein
STRING	XP_002517089.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2619	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-166	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Entrez Gene	105632026

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]