PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00220.30

Common Name

GRAS30, JCGZ_26819

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 674aa MW: 74961 Da PI: 5.785

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00220.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	447.6	8.3e-137	304	673	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn........sseelaalklfsevs 88 lv+lLl+cAeav+++d la+++L +l+ +sp gd+mqR+a++fteAL+arla + + ++ + s++s+ + s e l++++++++++ Jcr4S00220.30 304 LVHLLLACAEAVAKEDYMLARKYLHHLNRVVSPLGDSMQRVASFFTEALSARLAATLTAKPNTNTNSTSST-KpfspyppnSLEILKIYQILYQAC 398 68**************************************************94444333333333332.24778889899********* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 P++kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs s e+++etg+ L+++A++l+vpfe+++ va+ Jcr4S00220.30 399 PYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGS----SIESVRETGRCLTELAHSLHVPFEYHP-VAE 489 *********************************************************....9**********************.7 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 +l++l++++++ + gEalaVn+v +lhr++ + ++L ++++ P++v++ve+ea+hn++ Fl rfleal+yysa+fdsl+a++p++s Jcr4S00220.30 490 ELDNLKPHMFNRRVGEALAVNSVNRLHRVP--ANC----LGNLLAMIRDQAPNIVTLVEREASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSA 579 ***************************9..444....446************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+k+E+ ++++ei+n+vacegaer+erhe+lekWr+ +e GFk vpls +a++q + ll ++ dgyr+ e++g+l+lgW+dr+Lv++SaWr Jcr4S00220.30 580 QRAKLEQYIFAPEIRNIVACEGAERTERHERLEKWRKLMEGKGFKGVPLSANAVTQSRILLGLYSCDGYRLTEDKGCLLLGWQDRALVAASAWR 673 *******************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.47	278	653	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-134	304	673	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence Send to blast
MGSIKSESSS VSSELKNKTL LSSSELEHNN HLAPPNLTFP AVKYELDGDV EVQSPDSSMW 60 ETFFSDHLDS DFMILSPVRN LPSPQAWSCN YSYVHSTQGQ SISGCSPPRQ YLSQLTATNN 120 SLKGRGQSPL HRVFNSPNNN NNNNNNNNQF MQIESLSSLP AFEDFLDDYA NNNNQRDGII 180 SGGYQPSRFS TGNSANSFDI ETSIPAVLDC LDMHNPSSRF GASVSENSSV RSQDRDIYQM 240 TSLSQQLQQE QLEKQPPPPS TTPPAPLPPV ATALPEQQQQ NFNHSLMSPF PIGSEQEQDS 300 GLELVHLLLA CAEAVAKEDY MLARKYLHHL NRVVSPLGDS MQRVASFFTE ALSARLAATL 360 TAKPNTNTNS TSSTKPFSPY PPNSLEILKI YQILYQACPY VKFAHFTANQ AIFEAFEAEE 420 RVHVIDLDIL QGYQWPAFMQ ALAARPGGAP FLRITGVGSS IESVRETGRC LTELAHSLHV 480 PFEYHPVAEE LDNLKPHMFN RRVGEALAVN SVNRLHRVPA NCLGNLLAMI RDQAPNIVTL 540 VEREASHNGP YFLGRFLEAL HYYSAIFDSL DATFPPDSAQ RAKLEQYIFA PEIRNIVACE 600 GAERTERHER LEKWRKLMEG KGFKGVPLSA NAVTQSRILL GLYSCDGYRL TEDKGCLLLG 660 WQDRALVAAS AWRC

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence Send to blast

MGSIKSESSS VSSELKNKTL LSSSELEHNN HLAPPNLTFP AVKYELDGDV EVQSPDSSMW  60
ETFFSDHLDS DFMILSPVRN LPSPQAWSCN YSYVHSTQGQ SISGCSPPRQ YLSQLTATNN  120
SLKGRGQSPL HRVFNSPNNN NNNNNNNNQF MQIESLSSLP AFEDFLDDYA NNNNQRDGII  180
SGGYQPSRFS TGNSANSFDI ETSIPAVLDC LDMHNPSSRF GASVSENSSV RSQDRDIYQM  240
TSLSQQLQQE QLEKQPPPPS TTPPAPLPPV ATALPEQQQQ NFNHSLMSPF PIGSEQEQDS  300
GLELVHLLLA CAEAVAKEDY MLARKYLHHL NRVVSPLGDS MQRVASFFTE ALSARLAATL  360
TAKPNTNTNS TSSTKPFSPY PPNSLEILKI YQILYQACPY VKFAHFTANQ AIFEAFEAEE  420
RVHVIDLDIL QGYQWPAFMQ ALAARPGGAP FLRITGVGSS IESVRETGRC LTELAHSLHV  480
PFEYHPVAEE LDNLKPHMFN RRVGEALAVN SVNRLHRVPA NCLGNLLAMI RDQAPNIVTL  540
VEREASHNGP YFLGRFLEAL HYYSAIFDSL DATFPPDSAQ RAKLEQYIFA PEIRNIVACE  600
GAERTERHER LEKWRKLMEG KGFKGVPLSA NAVTQSRILL GLYSCDGYRL TEDKGCLLLG  660
WQDRALVAAS AWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-98	292	672	7	378	Protein SCARECROW
5b3h_A	6e-98	292	672	6	377	Protein SCARECROW
5b3h_D	6e-98	292	672	6	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405269	0.0	KM405269.1 Jatropha curcas GRAS30 protein (GRAS30) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012067557.1	0.0	DELLA protein RGL1
Swissprot	G7L166	0.0	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A067L033	0.0	A0A067L033_JATCU; GRAS30 protein
STRING	cassava4.1_032757m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9470	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	4e-98	RGA-like 1

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]