PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00213.70
Common NameJCGZ_11545, LOC105640456
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 319aa    MW: 34230.3 Da    PI: 9.1922
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00213.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73e-1497141347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
    Jcr4S00213.70  97 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 141
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.48690146IPR017930Myb domain
SuperFamilySSF466895.23E-1792147IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-1793144IPR006447Myb domain, plants
SMARTSM007171.8E-1094144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-1196141IPR009057Homeodomain-like
CDDcd001671.96E-997142No hitNo description
PfamPF002491.9E-1197141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAGTCTTGGG GGIAAGEIML FGVRVVVDSM RKSVSLNNLS QYEQPQELSK SNGTNKDGNG  60
INSGNKKEDV AAAGYASADD AVPHPSNSRG ERKRGVPWTE EEHKLFLLGL QKVGKGDWRG  120
ISRNFVKTRT PTQVASHAQK YFLRRSNLNR RRRRSSLFDI TTDTVTAFPM EEEQAHCQDN  180
KKNSTAPTTA ESHSLPPSPV PEANNGSNFC MLPAFSMTAS NPVVLPVPIE SPVENLSIGQ  240
GNLATTKPSA NLIRPIPILP TPHATGISDL NLNLKSSGDP SPLSLKLSLP SDQREPSSRH  300
SAFEVMSSFN NGDNIISVA
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00631PBMTransfer from PK23829.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080161.10.0transcription factor MYB1R1
SwissprotQ2V9B01e-77MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A067KH700.0A0A067KH70_JATCU; Uncharacterized protein
STRINGXP_002511478.11e-134(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42483154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.12e-57MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]