PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00200.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 564aa    MW: 62377.2 Da    PI: 8.115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00200.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-0592114123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  Jcr4S00200.10  92 FVCEICNKGFQRDQNLQLHRRGH 114
                    89*******************88 PP
2zf-C2H215.45.2e-05168190123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H++t+
  Jcr4S00200.10 168 WKCDKCSKKYAVQSDWKAHQKTC 190
                    58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-591114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.99E-891114No hitNo description
SMARTSM003550.01792114IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94992114IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SMARTSM0035598133163IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-5156189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.99E-8163189No hitNo description
SMARTSM0035594168188IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MSNITGDEGS FSSGNTGDEV QQLQETQQEQ HLQLQNHFHG SNNSAATNSN GSTSQEQQPQ  60
TVKKKRNLPG TPDPNAEVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL  120
RQRTTTEVRK RVYICPEPTC VHHNPARALG DLTGIKKHFS RKHGEKKWKC DKCSKKYAVQ  180
SDWKAHQKTC GTREYKCDCG TIFSRRDSFI THRAFCDALA EENNEVNQQG LMDFNSFEPK  240
NPLKSLPQEL VPMPFKSTNM GAGGGMFSSS SGTLFAGPRS ISSTSSSLQL SSNSSSGYNY  300
MQEGKNGCQI SGSAHMSATA LLQKAAQMGA TASNSTMNSP MMQKSFASSM TAGPEQISSI  360
RPPQSYGHLQ QQQQHGATSS YDHHHHHFLS QPDHQNQANM VGINNMSSGG FNDNNQTMQK  420
SPQDMSQYFE TNSTSSAMAS SGMNNMGIFS GMFIGTDQNP GFMKGIEHED SSGSNTLIHG  480
RAVNTGPSRF VGSNGEGVHD MMTRDFMGIG GSRPVNLHEQ QQQQRLEMEA MNQQQQQQRM  540
PMMNHFQQQI SLGESAMEKP IWDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-33164222361Zinc finger protein JACKDAW
5b3h_F5e-33164222361Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082706.10.0protein indeterminate-domain 2-like
TrEMBLA0A2C9VTY70.0A0A2C9VTY7_MANES; Uncharacterized protein
STRINGcassava4.1_030413m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.15e-99C2H2-like zinc finger protein