PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 359aa MW: 39816.9 Da PI: 8.791

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00166.140	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	146	169	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F+++ +L++H+ H Jcr4S00166.140 146 FPCTACGEIFPTPNLLEQHLAIkH 169 89*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.182	146	174	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	148	169	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	8.06E-11	171	358	No hit	No description
Gene3D	G3DSA:3.90.228.10	8.9E-7	291	358	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MAKGIVSVFN KFFSIFLLLV HLGCFIFTSK DNQPTKKRKI SPLSPSSSSS SFRLKPHRAL 60 SSSLSYLKRI FTSKACKNSS NVQSPVPTLT SARSSQQSIV SMVAPAEDQT SDIPPPRKMP 120 VPAGSCQESD ISTTNDQFFP LRNDIFPCTA CGEIFPTPNL LEQHLAIKHA VSELQDGDSG 180 KNIVYIIFKT GWSCKEKNPE ILRILKIHNS PKILSRFEEY RELVKAKAAR KRFRVNGNSS 240 VCNQQYCSVC GIIKCGFSPK MDGISTLSTS LRAHVAIPED IEEEFKFMNV KRAMLVCRVI 300 AGRVGSELEE EEEVNKEDGG FDSLLGRGGS GVHTRLDEEE LVVFNPRAVL PCFVIVYTV

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MAKGIVSVFN KFFSIFLLLV HLGCFIFTSK DNQPTKKRKI SPLSPSSSSS SFRLKPHRAL  60
SSSLSYLKRI FTSKACKNSS NVQSPVPTLT SARSSQQSIV SMVAPAEDQT SDIPPPRKMP  120
VPAGSCQESD ISTTNDQFFP LRNDIFPCTA CGEIFPTPNL LEQHLAIKHA VSELQDGDSG  180
KNIVYIIFKT GWSCKEKNPE ILRILKIHNS PKILSRFEEY RELVKAKAAR KRFRVNGNSS  240
VCNQQYCSVC GIIKCGFSPK MDGISTLSTS LRAHVAIPED IEEEFKFMNV KRAMLVCRVI  300
AGRVGSELEE EEEVNKEDGG FDSLLGRGGS GVHTRLDEEE LVVFNPRAVL PCFVIVYTV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020533879.1	0.0	uncharacterized protein LOC105630636
TrEMBL	A0A067LNS3	0.0	A0A067LNS3_JATCU; Uncharacterized protein
STRING	cassava4.1_033577m	0.0	(Manihot esculenta)
STRING	XP_002525610.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10668	29	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	5e-92	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	105630636

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]