PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00158.210 | ||||||||
Common Name | JCGZ_24477, LOC105631171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 128aa MW: 14247.5 Da PI: 4.4062 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.8 | 2.1e-12 | 11 | 55 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT e d+ + da + ++ + +W++Ia+ ++ g+tl+++k+++ Jcr4S00158.210 11 VWTREQDKAFEDALATYPEDavdRWEKIAADVP-GKTLEELKLHYE 55 7********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.136 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 4.3E-9 | 8 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-5 | 10 | 57 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.73E-11 | 10 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.7E-9 | 11 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.58E-9 | 12 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MIADEADCSS VWTREQDKAF EDALATYPED AVDRWEKIAA DVPGKTLEEL KLHYELLVED 60 LNQIEAGCVP LPNYSSMEGS ISQAGDEGTT KKGGQMGHHN SESTHGNKAS RSDQERRKGI 120 AWTEDEHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-20 | 12 | 81 | 11 | 80 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012068582.1 | 4e-91 | transcription factor SRM1 | ||||
Refseq | XP_012068583.1 | 4e-91 | transcription factor SRM1 | ||||
Refseq | XP_020533997.1 | 4e-91 | transcription factor SRM1 | ||||
Refseq | XP_020533998.1 | 4e-91 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 8e-46 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A067KZR0 | 9e-90 | A0A067KZR0_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_012921m | 2e-77 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16956 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 3e-48 | MYB family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105631171 |
Publications ? help Back to Top | |||
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