PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00148.70
Common NameJCGZ_25752, LOC105646903
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 208aa    MW: 23314.9 Da    PI: 7.6614
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00148.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-202675255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a+++a+++++g
  Jcr4S00148.70 26 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDKAAREFRG 75
                   69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.6E-402689IPR001471AP2/ERF domain
PfamPF008473.6E-142675IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-332683IPR001471AP2/ERF domain
PROSITE profilePS5103224.1572683IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-232683IPR016177DNA-binding domain
CDDcd000183.10E-322683No hitNo description
PRINTSPR003671.2E-112738IPR001471AP2/ERF domain
PRINTSPR003671.2E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAPKEKSNAA TDLKKSSGYN DKKEMHYRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE  60
EAARAYDKAA REFRGSKAKT NFPPPSEITP INTKVVNYTD NQSPSQSSTV ESSSPPAARE  120
LSRDLMERFP FVYQQQKAVG TIWFLDGNIR PEFVTHRFPV RFEPVGVEFN DGLMSGGTQS  180
DSDSSSVVDG KPARDFDLNL LPSEEEEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-232383263ATERF1
3gcc_A7e-232383263ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088236.11e-153ethylene-responsive transcription factor 9
TrEMBLA0A067JVT31e-152A0A067JVT3_JATCU; Uncharacterized protein
STRINGcassava4.1_032424m5e-86(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-36erf domain protein 9
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]