PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00148.50
Common NameJCGZ_25754, LOC105646905
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 364aa    MW: 41246.4 Da    PI: 7.9885
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00148.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.5e-09130151426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    + C+ f+r G C++Gd+C FaHg
  Jcr4S00148.50 130 AVCPEFRR-GGCSRGDTCEFAHG 151
                    78******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-5126152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.737127153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-6130153IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-7130151IPR000571Zinc finger, CCCH-type
SMARTSM003561.4161184IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSTVCAEQHK LYPSHQLFSC KKPFKDLEIP PRKLFSKKIL QENPDMSPFD STLRKFILFN  60
DSNNGDHSNS HEKLSNEDLD PYSSDHFRMY EFKVRRCTRS RSHDWTDCPF AHPGEKARRR  120
DPRKYHYSGA VCPEFRRGGC SRGDTCEFAH GVFECWLHPS RYRTEACKEG KNCKRKICFF  180
AHSPQQLRIL PEVSSDTIKY DKSLASPCSS LNHGHCCCLS CHSVISSPTS TLLGMSHISP  240
PLSPSWSPSP PLSPVKCHGF SRYSDRLSKP RSGLISYKDV LTELMSSLEA MNFNDASLSE  300
DQQQQTQMIL SPSTSNPSGL SRNFWNGDCS RNESIDEKIN NNNGGGLVGN LDHPDLGWVN  360
ELLM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088238.10.0zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA12e-82C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A067JJM30.0A0A067JJM3_JATCU; Uncharacterized protein
STRINGcassava4.1_008973m1e-161(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-83C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]