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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00138.140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | G2-like | ||||||||
Protein Properties | Length: 952aa MW: 106087 Da PI: 5.5707 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.6 | 2.9e-33 | 723 | 777 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLH++Fveav++LGGse+AtPk +l+lm+v+gLt++hvkSHLQkYR+ Jcr4S00138.140 723 KTRMRWTPELHDAFVEAVNKLGGSERATPKGVLKLMNVEGLTIYHVKSHLQKYRT 777 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51580 | 173.054 | 4 | 531 | IPR025776 | Histone-lysine N-methyltransferase SUVR4/SUVR1/SUVR2 |
Gene3D | G3DSA:2.170.270.10 | 2.2E-63 | 177 | 272 | No hit | No description |
SMART | SM00468 | 1.3E-14 | 184 | 321 | IPR007728 | Pre-SET domain |
Pfam | PF05033 | 1.0E-12 | 187 | 329 | IPR007728 | Pre-SET domain |
SuperFamily | SSF82199 | 7.36E-58 | 194 | 489 | No hit | No description |
PROSITE profile | PS50867 | 8.647 | 240 | 334 | IPR007728 | Pre-SET domain |
Gene3D | G3DSA:2.170.270.10 | 2.2E-63 | 307 | 490 | No hit | No description |
SMART | SM00317 | 1.3E-24 | 337 | 472 | IPR001214 | SET domain |
PROSITE profile | PS50280 | 14.229 | 337 | 466 | IPR001214 | SET domain |
Pfam | PF00856 | 1.5E-11 | 349 | 466 | IPR001214 | SET domain |
PROSITE profile | PS50868 | 8.266 | 477 | 493 | IPR003616 | Post-SET domain |
PROSITE profile | PS51294 | 10.751 | 720 | 780 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-30 | 722 | 779 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-17 | 722 | 777 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-24 | 723 | 777 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.1E-10 | 725 | 776 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.4E-24 | 808 | 855 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034968 | Biological Process | histone lysine methylation | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0018024 | Molecular Function | histone-lysine N-methyltransferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 952 aa Download sequence Send to blast |
PCLDSLLIFE GFSTGNKALS CLTSQYDASC SGSTESTLCE SNFAIASSTL QQVKILLNCD 60 FAVQQSNFQV PEINAVLKTL EDRYLRMHKL VSPQFSVMKL LKDFCDLYLE LGTVSSNWPV 120 ADNSPVVRKV GDPFHSVGSN RKASSDQALK GKASKPCRFS NFHNLVNVQQ GTTAIDVKKS 180 IKKLNDITKG SENVQISLIA EVGNDDIPKF TYMPQNIIYQ NACMQISLAR IADEDCCSGC 240 SGDCLSHQLP CACARETRGE FAYTQQGLLT QEFLRESVST KRDPHIKNFV FCQEYCPLER 300 YKKCKGHLVR KFIKECWMKC GCDMNCGNRI IQRGITCNLQ VFLTHEDKGW GVRTLNDLPE 360 GTFVCEYVGE ILTNTELYDR NMQNSGSDRH TYPVTLDADW GSERVLRDDE ALCLDATFSG 420 NVARCNDANL IDIPVQVETP DRHYYHLAFF TTREVRAFEE LTWDYGIDFD DHDHPIKAFQ 480 CCCGSASCRD LKGNNYYVVL AQGSCAKQLT SNVSIFSKRE LTKGPVSQQA SSLGPNIGTT 540 GHLSSSSLRF LNQVHSSFSS PRRVQSQNYP FIAKSSSDGG PLLGAPTGSS HSDVQPTALM 600 TDPEENNNMS WSIDPLHDLL DFPENIPVQN GQVESNIGVI SSEDISKKAD WQDWADQLIS 660 VDDDLEPNWS EILNDANATD AKQKVLKSPS GISVQPQIHQ HQVVSSGETY TAANPTSAAP 720 AAKTRMRWTP ELHDAFVEAV NKLGGSERAT PKGVLKLMNV EGLTIYHVKS HLQKYRTARY 780 KPESSEGSSE KKLNPIDEMK SLDLKTSMGI TEALRLQMEV QKRLHEQLEI QRNLQLRIEE 840 QGRYLQMMFE KQRKMEEEKS KDSSSSPVDD PSLPQSNLVQ QPGNNKSEVS QQDNAKTGFD 900 GNDAGSALEE SFQSVSKKQK VQENKTCKGF DPEDNECSPA SAKRPRTDET EL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3fpd_A | 9e-32 | 186 | 489 | 8 | 259 | Histone-lysine N-methyltransferase, H3 lysine-9 specific 5 |
3fpd_B | 9e-32 | 186 | 489 | 8 | 259 | Histone-lysine N-methyltransferase, H3 lysine-9 specific 5 |
5tuz_A | 9e-32 | 186 | 489 | 8 | 259 | Histone-lysine N-methyltransferase EHMT1 |
5tuz_B | 9e-32 | 186 | 489 | 8 | 259 | Histone-lysine N-methyltransferase EHMT1 |
5vsd_A | 9e-32 | 186 | 489 | 8 | 259 | Histone-lysine N-methyltransferase EHMT1 |
5vsd_B | 9e-32 | 186 | 489 | 8 | 259 | Histone-lysine N-methyltransferase EHMT1 |
5vsf_A | 9e-32 | 186 | 489 | 8 | 259 | Histone-lysine N-methyltransferase EHMT1 |
5vsf_B | 9e-32 | 186 | 489 | 8 | 259 | Histone-lysine N-methyltransferase EHMT1 |
6mbo_A | 9e-32 | 186 | 489 | 8 | 259 | Histone-lysine N-methyltransferase EHMT1 |
6mbo_B | 9e-32 | 186 | 489 | 8 | 259 | Histone-lysine N-methyltransferase EHMT1 |
6mbp_A | 9e-32 | 186 | 489 | 8 | 259 | Histone-lysine N-methyltransferase EHMT1 |
6mbp_B | 9e-32 | 186 | 489 | 8 | 259 | Histone-lysine N-methyltransferase EHMT1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4512 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.3 | 7e-87 | G2-like family protein |