PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00123.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 622aa    MW: 70753.6 Da    PI: 4.9564
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00123.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.71.2e-32121361128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lp G rF Ptd++lv +yLk+k +g++++ +++++ ++ ++++PwdL   +k k+++k w+fF  r+ ++++g  ++r++ +gyWk tg  ++v++
  Jcr4S00123.30  12 LPLGWRFAPTDQQLVGHYLKRKRHGDPIDGSDIVEVIKFCNYNPWDLAglSKNKSTDKVWFFFYLREYRNNSGL-AKRKAGNGYWKITGDPRSVTQ 106
                    689***************************9989999**********853366778889******999887665.5555799************** PP

            NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    + ++e++g+k++Lvf+   +p+   t+Wvmhey+ 
  Jcr4S00123.30 107 EgSDEEIGTKRILVFH---NPD--ATHWVMHEYEY 136
                    977788**********...444..79*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-397156IPR003441NAC domain
PROSITE profilePS5100536.66512156IPR003441NAC domain
PfamPF023658.9E-2113135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MANAPVLFAQ NLPLGWRFAP TDQQLVGHYL KRKRHGDPID GSDIVEVIKF CNYNPWDLAG  60
LSKNKSTDKV WFFFYLREYR NNSGLAKRKA GNGYWKITGD PRSVTQEGSD EEIGTKRILV  120
FHNPDATHWV MHEYEYTAEL NSPIQGNYVL CKLKKKPNEK KKTVKRSKKE EPICKKPRAQ  180
KKARKGESAS VSASASENKI SEEIRAYSAY GEGEPRNSNH IISDLSNQNS KKMAAIATND  240
KGEASNLEAL DYDNQSLCEV ISISTCNTGE TSSLIASTLG NQKFSQMTDV SSYKEGETIR  300
LMASDIENYN PNEMTAMSSY KNSKPSYTTS GLQDQNSYEI TTVSSNNKGE ASPCMTNENQ  360
NSNEMAKQSF PFQNQNSNEM ANESFHFQNE NSNEMPKESF HLQNQNHNSN EMANENENSN  420
EMAKQSLHFQ NENSNEMANE SFQFQNQNSN EMAKDSFPFQ SQNPNEMPKE SFYEKGKPTY  480
LDSLDLKNQN PSKSSNKSAS TKGVWSSLSE TPSDFDNQNQ PEKTDVSPLK HYPSSYMAYN  540
AGEKSQAEQS QYKVPVIPNP LMNFNSQEEM LQNQYSSIFE DDYLEEEMLP LDWPWTFSGR  600
GENTFSETDL QLWEDWLKQY TA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-201116214174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753420.0KC775342.1 Jatropha curcas NAC transcription factor 064 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020539896.10.0NAC domain-containing protein 41-like
TrEMBLR4N7R80.0R4N7R8_JATCU; NAC transcription factor 062
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1703136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.16e-28NAC domain containing protein 4