PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00117.210
Common NameJCGZ_04433, LOC105633797
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 96aa    MW: 10988.5 Da    PI: 9.7722
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00117.210genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.48.1e-09852345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+   +l+ +a + +  +   +W+  ar +g g+t +++k ++ 
   Jcr4S00117.210  8 SWTPKQNKLFENALAIYDRDtpdRWHNLARAVG-GKTVEEVKRHYE 52
                     7*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.186459IPR017884SANT domain
SMARTSM007178.5E-8557IPR001005SANT/Myb domain
CDDcd001677.66E-7855No hitNo description
PfamPF002499.2E-6852IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-5861IPR009057Homeodomain-like
SuperFamilySSF466896.24E-13862IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010114Biological Processresponse to red light
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MASASGSSWT PKQNKLFENA LAIYDRDTPD RWHNLARAVG GKTVEEVKRH YELLVEDVRQ  60
IEAGQVPLPN YRKAGLTAKP YSFMDEEKRL KSLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-34196193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071856.19e-67protein RADIALIS-like 3
SwissprotQ1A1735e-36RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A067KU422e-65A0A067KU42_JATCU; Uncharacterized protein
STRINGXP_002510392.13e-53(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-38RAD-like 6
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]