PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00100.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 602aa MW: 68611.7 Da PI: 8.5053

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00100.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	413	436	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC++C+ksF+ +L +H + H Jcr4S00100.10 413 WKCGYCKKSFRAEKYLDQHFDSrH 436 58*****************77666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00730	6.7E-29	1	249	IPR006639	Presenilin/signal peptide peptidase
Pfam	PF04258	5.4E-46	3	141	IPR007369	Peptidase A22B, signal peptide peptidase
Pfam	PF04258	1.5E-20	184	261	IPR007369	Peptidase A22B, signal peptide peptidase
PROSITE profile	PS50157	8.642	413	436	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	415	436	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0004190	Molecular Function	aspartic-type endopeptidase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
LEIEFTRSQI VAGIPGTFFC AWYASQKHWL ANNILGLAFC IQGIEMLSLG SFKTGAILLA 60 GLFVYDIFWV FFTPVMVSVA KSFDAPIKLL FPTADAARPF SMLGLGDIVI PGKLLKFQVN 120 VCYWFTRVSS QARAQYFRVE RLAALELLLS LARAKFNSIK LSFKPDRFNC KMEIDLSISS 180 ACCIFVALAL RFDVSRGKHS QYFKSAFLGY TFGLVLTIIV MNWFQAAQPA LLYIVPAVIG 240 FLTAHVIWNG EVKPLMEFDE SKGAASSQDS SETNSSKKVD KKIQVKEDHL NSTIPRRSSP 300 FVNKRQWNNC HLEIRISCCF CKLGECGLAH LAVAGEFSSP VYREPTIKQE NHAHEVHCSR 360 ERSRAAWQVI DEYLMPFVER EKYQISRKCR LHPDNDLFRD QEQHKVHLDI TEWKCGYCKK 420 SFRAEKYLDQ HFDSRHYNLL NVSDGKCLAD LCGALHCDFV IKFQNHQKTK CNPAAVAKNR 480 HLCEITAFLL IRVLQPAVCI ELFLRQFCDA HTCSGKRKYF PKGGQVMLYP RCSMLYICFF 540 IFSICAEANE CVLPGYFNTD FDVAASFLSY CLFVSKRNEA GNPRAEANTQ SWPEDKTIVI 600 QR

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

LEIEFTRSQI VAGIPGTFFC AWYASQKHWL ANNILGLAFC IQGIEMLSLG SFKTGAILLA  60
GLFVYDIFWV FFTPVMVSVA KSFDAPIKLL FPTADAARPF SMLGLGDIVI PGKLLKFQVN  120
VCYWFTRVSS QARAQYFRVE RLAALELLLS LARAKFNSIK LSFKPDRFNC KMEIDLSISS  180
ACCIFVALAL RFDVSRGKHS QYFKSAFLGY TFGLVLTIIV MNWFQAAQPA LLYIVPAVIG  240
FLTAHVIWNG EVKPLMEFDE SKGAASSQDS SETNSSKKVD KKIQVKEDHL NSTIPRRSSP  300
FVNKRQWNNC HLEIRISCCF CKLGECGLAH LAVAGEFSSP VYREPTIKQE NHAHEVHCSR  360
ERSRAAWQVI DEYLMPFVER EKYQISRKCR LHPDNDLFRD QEQHKVHLDI TEWKCGYCKK  420
SFRAEKYLDQ HFDSRHYNLL NVSDGKCLAD LCGALHCDFV IKFQNHQKTK CNPAAVAKNR  480
HLCEITAFLL IRVLQPAVCI ELFLRQFCDA HTCSGKRKYF PKGGQVMLYP RCSMLYICFF  540
IFSICAEANE CVLPGYFNTD FDVAASFLSY CLFVSKRNEA GNPRAEANTQ SWPEDKTIVI  600
QR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147452	1e-118	EF147452.1 Populus trichocarpa clone WS01231_E16 unknown mRNA.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3216	13	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	4e-82	C2H2-like zinc finger protein