PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00053.100 | ||||||||
Common Name | JCGZ_21957, LOC105650022 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bHLH | ||||||||
Protein Properties | Length: 343aa MW: 38810.3 Da PI: 5.3769 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.3 | 8.5e-06 | 220 | 263 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++r+RR+ri +++ L l+P++ s +++ ++Y+k Lq Jcr4S00053.100 220 RADRQRRERIAERLKALHNLVPQS-----VEGSQTAMVDDIIDYVKFLQ 263 579********************8.....56788888888888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.995 | 213 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.23E-9 | 216 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-5 | 219 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-8 | 220 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.31E-6 | 221 | 267 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MEGQNCYQNP LELMLPNLDG IDNHVSYGAD DDLNQHSVMS DGRSKNMTNS LPLPQSQWFH 60 CQRTPQNYYE FLTENSSLVE KAPTHVLESI PQTVSDSHFI QGMTGIQTEL LYNSSGMACG 120 SNPVDSSSDM DAWKLNLHPC IFNVDNQEDS LNVRCLKQND EGDPVKKCKC LQHHSKSQSH 180 TSWEEEPSEA IGNLSYSRPR AKVAASVFLS NSSYNVSRQR ADRQRRERIA ERLKALHNLV 240 PQSVEGSQTA MVDDIIDYVK FLQLQVKELS RSRLGGELRS DPSIFLEGYH HYIVHEQFRT 300 EPLEETFTRL LEVNPSAATK FLESKGLFVM PMALADTISQ QSI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 222 | 227 | RQRRER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012092278.1 | 0.0 | uncharacterized protein LOC105650022 | ||||
Refseq | XP_012092279.1 | 0.0 | uncharacterized protein LOC105650022 | ||||
TrEMBL | A0A067JCB4 | 0.0 | A0A067JCB4_JATCU; Uncharacterized protein | ||||
STRING | XP_002520769.1 | 1e-114 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12164 | 24 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30980.1 | 4e-18 | LJRHL1-like 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 105650022 |
Publications ? help Back to Top | |||
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