PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00042.170

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Protein Properties

Length: 315aa MW: 36752.3 Da PI: 7.4966

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00042.170	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.3	1.2e-17	131	220	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +t+s+v+ +l lp +f++++ +k ++ ++lede+g + e k+ ++k++ l++GW++F+ +++L +gD +vF+l++ +ef +v Jcr4S00042.170 131 FVKPMTQSHVTGGFWLGLPVQFCKDNL-PK-RDEYIILEDENGDTSESKYLVEKTG----LSAGWRGFAIDHKLVDGDALVFQLVSPKEF--KVY 217 89*******************9994.33.5568***********777776....*********************9987777..888 PP EE- CS B3 96 vfr 98 ++r Jcr4S00042.170 218 IIR 220 887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-21	122	221	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-24	124	221	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.15E-25	129	220	No hit	No description
Pfam	PF02362	5.9E-16	131	221	IPR003340	B3 DNA binding domain
SMART	SM01019	2.2E-23	131	222	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.773	131	222	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MVVSKSRYEE IRQQRLEENK KRMEELNLKK LCQDLRTNSP KSSPVKQAKP RLPRSPKDLV 60 PVRRSTRFAD KPPVSYKEIR QEPLERPMRS YGSYRRRDLN NRIYASDDLR EAAIDRAEQL 120 QSSLEPGFPS FVKPMTQSHV TGGFWLGLPV QFCKDNLPKR DEYIILEDEN GDTSESKYLV 180 EKTGLSAGWR GFAIDHKLVD GDALVFQLVS PKEFKVYIIR AYELGDNEDK ENEEVELIED 240 NDNEDKEHKE EMNKVNKDLD VAPLDRRSSK RIKAKVEING DKENKEEINE DNKKDSDITQ 300 LDRRSSKRIK ASNYF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012066890.1	0.0	B3 domain-containing protein At3g19184 isoform X2
Swissprot	Q1G3M3	4e-81	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A067L522	1e-162	A0A067L522_JATCU; Uncharacterized protein
STRING	POPTR_0009s10590.1	1e-118	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-81	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]