PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00030.120
Common NameJCGZ_04343, LOC105633705
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 361aa    MW: 41395.7 Da    PI: 6.1936
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00030.120genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.91.6e-17331141198
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +  + l +p +f+++    k+ +kt+tl+ +sg++W+v l      + +++  GW+eFv+++ L+e+D ++Fk++g+s+f   v +f+
  Jcr4S00030.120  33 GFDRKLAIPEQFTKNLR--KKLPKTITLKGPSGNTWQVGL--MTFHDIVYFIYGWQEFVNDHFLQEKDLLIFKYNGDSCF--DVLIFD 114
                     555679*******6555..45999****************..55555556666***************************..888887 PP
2B346.18.9e-15258339184
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f  v++p +v+++  +++p   +++h       e+++++l+  + ++W+ k+ y++++++  l++GWk+F+ an+L+e D++vF+ 
  Jcr4S00030.120 258 FMVVMKPTHVHRRFYMSIPSAWMSKHlsT---LEKQDVILRV-KENTWNTKFYYQRSKNSGGLSSGWKNFAIANDLNEFDVLVFEP 339
                     77899*********************532...3444677665.889******9999999999**********************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.69E-2122114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.39523116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-2125114IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.4E-1226116IPR003340B3 DNA binding domain
CDDcd100172.82E-1931114No hitNo description
PfamPF023628.8E-1534114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-16256355IPR015300DNA-binding pseudobarrel domain
CDDcd100174.88E-21258355No hitNo description
SMARTSM010196.4E-8258357IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-15258340IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.237258357IPR003340B3 DNA binding domain
PfamPF023625.2E-13258341IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGEEACGDCR SWEEEMYWTH FQCLHFSQFL HAGFDRKLAI PEQFTKNLRK KLPKTITLKG  60
PSGNTWQVGL MTFHDIVYFI YGWQEFVNDH FLQEKDLLIF KYNGDSCFDV LIFDGQSLCE  120
KAASYFVRKC GHRTPDSSCQ TKRKIGESSA EGTLPYPEDI AGGSPPEKSA NNDFDTTPSG  180
QPVTFRATAK KTRREIEFNP VHEEPSTSEE IDVKPDIEHV SPSVVHDVPY ISSRRLVTDE  240
EKQNALQLAQ AAITREGFMV VMKPTHVHRR FYMSIPSAWM SKHLSTLEKQ DVILRVKENT  300
WNTKFYYQRS KNSGGLSSGW KNFAIANDLN EFDVLVFEPA SPVNDAIVLD VNIFRVLHED  360
Y
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071732.10.0B3 domain-containing protein REM16
RefseqXP_020534876.10.0B3 domain-containing protein REM16
TrEMBLA0A067KTW30.0A0A067KTW3_JATCU; Uncharacterized protein
STRINGcassava4.1_010400m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-82B3 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]