PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00030.110
Common NameJCGZ_04342
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 340aa    MW: 39361 Da    PI: 9.3391
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00030.110genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.75.9e-2035117997
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     +++ ++rl +p kfa++ ++k   + t+ l+++ g  Wev l  + + ++ ++ +GW+eFvk++ L+e+D++vFk++g+s+f   v vf
  Jcr4S00030.110  35 HAGFEQRLAIPEKFARNLKSK--LPDTVNLKSPCGALWEVSL--TANENTLFFDQGWQEFVKDHSLQENDILVFKYNGESRF--DVLVF 117
                     5667789********877766..888****************..9********************************99999..66666 PP
2B349.76.8e-16236321185
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkl.iy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     f+ v++p +v+++  + +p   +++h      ++k+l+    + ++W+++l +y  +++++r  l++GWk+Fv +n+L e D++vF+  
  Jcr4S00030.110 236 FIAVMKPTHVSRKFFMNVPYAWITKHiA-C--REKQLVTLRIKEKTWTMRLlCYrkDRNRQRGGLAGGWKNFVVDNKLHESDVCVFEPG 321
                     7889**********************53.2..233466677899*******5557777788899**********************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.51E-2124118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.07427120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-2329118IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-1630120IPR003340B3 DNA binding domain
PfamPF023621.3E-1735116IPR003340B3 DNA binding domain
CDDcd100171.40E-1935118No hitNo description
Gene3DG3DSA:2.40.330.102.3E-17232336IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-14236322IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-15236321IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-10236338IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237236338IPR003340B3 DNA binding domain
CDDcd100171.47E-19236336No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MRIEMGEEPR KDCRSWEEDI YWSHFQYIHF SQFLHAGFEQ RLAIPEKFAR NLKSKLPDTV  60
NLKSPCGALW EVSLTANENT LFFDQGWQEF VKDHSLQEND ILVFKYNGES RFDVLVFNGQ  120
SMCENAASYF LRKREHEEHD IGCQTKRKNS QNSAEVVITS PGDGSGSSLP KKPRNKEIYT  180
PVIVNKKAQR GIKFNSPTVR MRGTDTSTED AEVKPDIDRK KKVLQAAQAT LTHEGFIAVM  240
KPTHVSRKFF MNVPYAWITK HIACREKQLV TLRIKEKTWT MRLLCYRKDR NRQRGGLAGG  300
WKNFVVDNKL HESDVCVFEP GSLTDKEIIL DVNIFRVVPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071731.10.0B3 domain-containing protein REM16
TrEMBLA0A067KQK20.0A0A067KQK2_JATCU; Uncharacterized protein
STRINGXP_002510292.11e-143(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-76B3 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]