PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00030.100

Common Name

JCGZ_04341

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Protein Properties

Length: 506aa MW: 56380 Da PI: 8.6893

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00030.100	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.1	5.7e-12	7	67	34	98
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++l+ +sg+ W v+l + + ++l GW F k++ ++ gD++vF++dg+ +f +v+vf+ Jcr4S00030.100 7 GSVSLTGPSGNIWPVNL--IQENDNIFLDHGWPTFLKDHFIECGDVLVFRYDGELCF--TVQVFD 67 4699***********..67777799***********************99999..999987 PP
2	B3	55.5	1e-17	406	495	4	96
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++ + +v+ s l +p kf ++h +++++++l++++g++W+v+ + k+++ +++ +GW Fv++n++k gD+++F+l+++ e++v++ Jcr4S00030.100 406 IMRKFNVSGSYTLKIPHKFSAAHLP--NSKTEIILRNLQGKRWTVNSVPDSKGRAvHTFCGGWMAFVRENDVKMGDICIFELVSK--CEMLVHI 495 566667788889******99953..35579***********6655555579999*******************9873..3356766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	2.86E-11	1	67	No hit	No description
PROSITE profile	PS50863	13.211	1	69	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.92E-16	4	74	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.8E-9	5	67	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.3E-14	5	71	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.89	5	69	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.3E-12	191	269	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.12E-13	192	269	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.63E-10	194	269	No hit	No description
SMART	SM01019	0.24	196	291	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	7.584	196	297	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.7E-23	395	496	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.53E-23	396	497	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.74E-21	401	495	No hit	No description
PROSITE profile	PS50863	13.662	403	499	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-14	403	495	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-13	403	499	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MEGRTSGSVS LTGPSGNIWP VNLIQENDNI FLDHGWPTFL KDHFIECGDV LVFRYDGELC 60 FTVQVFDLSA CEKEAAFHTK CSQDPSQFYR SIGQKREREE EAASSDKSDE CVTKKVKGES 120 SEHLEHVDAA TRKCQEESSS HKMKQYEGNC NEIPDATIQN RIGKEGKNMP DRGYGSIFSE 180 REKRVAQSFI SCFPYFVRIM KRFNVSGSYT LNIPYQFSTA HLPDCKTEIV LRTIKGECWT 240 VNSVPTTRVH TSHTFCGGWM AFVRRNSMEN QGGKVASDGV SVGCNAISHK IESFPKKSRR 300 TALKLHSRLI SKVEICDKKG SNKSQEATFS NHTRKHDKAT KVSASGALCT QSKLGNEKLD 360 VAIRSGKNLD IELSSHAGAS VKMMVALGEK DAAKSFTSAF PNFVRIMRKF NVSGSYTLKI 420 PHKFSAAHLP NSKTEIILRN LQGKRWTVNS VPDSKGRAVH TFCGGWMAFV RENDVKMGDI 480 CIFELVSKCE MLVHISGVGD EAFCPS

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MEGRTSGSVS LTGPSGNIWP VNLIQENDNI FLDHGWPTFL KDHFIECGDV LVFRYDGELC  60
FTVQVFDLSA CEKEAAFHTK CSQDPSQFYR SIGQKREREE EAASSDKSDE CVTKKVKGES  120
SEHLEHVDAA TRKCQEESSS HKMKQYEGNC NEIPDATIQN RIGKEGKNMP DRGYGSIFSE  180
REKRVAQSFI SCFPYFVRIM KRFNVSGSYT LNIPYQFSTA HLPDCKTEIV LRTIKGECWT  240
VNSVPTTRVH TSHTFCGGWM AFVRRNSMEN QGGKVASDGV SVGCNAISHK IESFPKKSRR  300
TALKLHSRLI SKVEICDKKG SNKSQEATFS NHTRKHDKAT KVSASGALCT QSKLGNEKLD  360
VAIRSGKNLD IELSSHAGAS VKMMVALGEK DAAKSFTSAF PNFVRIMRKF NVSGSYTLKI  420
PHKFSAAHLP NSKTEIILRN LQGKRWTVNS VPDSKGRAVH TFCGGWMAFV RENDVKMGDI  480
CIFELVSKCE MLVHISGVGD EAFCPS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012071730.1	0.0	B3 domain-containing protein Os01g0723500 isoform X1
TrEMBL	A0A067KQC9	0.0	A0A067KQC9_JATCU; Uncharacterized protein
STRING	cassava4.1_004019m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11470	32	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	5e-11	B3 family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]