PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00027.270

Common Name

JCGZ_23160, LOC105647368

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 759aa MW: 81322.2 Da PI: 6.7286

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00027.270	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.6	3.5e-16	470	516	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq Jcr4S00027.270 470 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 516 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.77E-17	462	520	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.9E-20	463	524	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-20	463	527	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.349	466	515	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-13	470	516	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-17	472	521	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009704	Biological Process	de-etiolation
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010017	Biological Process	red or far-red light signaling pathway
GO:0031539	Biological Process	positive regulation of anthocyanin metabolic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence Send to blast
MPLSELVYRL AKGKFDSSQE KNPTYLTDLS SAPENDFLEL VWENGQVQSS KGRKNQISNG 60 LLSQTSKIRD KDIGNGSNNK MGRFGSMGSV LGEVPMSMPS VELGSNQDDD MVPWLNYPID 120 DPLQHDYCSE FLTELSGVTV NENCQNHYPS LDKRNSGNQS IRDSPTVSVH NVSSIEQAHM 180 PKVSSTEHAD AASAGPRTSS SHLYPSPSQQ CQTSFPYFRS RFSVNNGENI NNLTRHPASG 240 NSIRGPSSRG GFPSTEAQKS SPVLSSTNSS LMNFSHFSRP ASLVKANLHN IGTRAGSGIS 300 NIETMGGKDK GSDTSNSNPV EPTCVDTFGG LPKDLSSQSQ PIMVSSKVDA KPLNHKPTEE 360 LLPAKQPEAL DQEDDSKNDR SHCQIAESAI RGLADSGKNA EPVVASSSVC SGNSVERVSE 420 EPTQDLKRKY QEIEESEGPS EDVEEESVGA KRAAPARGST GSKRSRAAEV HNLSERRRRD 480 RINEKMRALQ ELIPNCNKVD KASMLDEAIE YLKTLQLQVQ IMSMGAGLYM PSMMLPPGMP 540 HMHAPHMAQF SPMGVGMGMG MGFGMGMPDM IVGSSGCSMI QMPPMHGAHF PSPPISGPSA 600 LHGMSGSNLP IFGLSSQGHP MPYPCAPLMP MSGGSLLKTT MGMNAGGVAG PMNNLDSAPV 660 SGSKDSIQNV NSRTMQNCGA NISMNQTSRQ CQVTNDRIEQ PALVQNSGPS SEVTDGGRAL 720 KSANANDNVP GRAAGFLILV IKSKSIILPV KVKPFPSSW

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence Send to blast

MPLSELVYRL AKGKFDSSQE KNPTYLTDLS SAPENDFLEL VWENGQVQSS KGRKNQISNG  60
LLSQTSKIRD KDIGNGSNNK MGRFGSMGSV LGEVPMSMPS VELGSNQDDD MVPWLNYPID  120
DPLQHDYCSE FLTELSGVTV NENCQNHYPS LDKRNSGNQS IRDSPTVSVH NVSSIEQAHM  180
PKVSSTEHAD AASAGPRTSS SHLYPSPSQQ CQTSFPYFRS RFSVNNGENI NNLTRHPASG  240
NSIRGPSSRG GFPSTEAQKS SPVLSSTNSS LMNFSHFSRP ASLVKANLHN IGTRAGSGIS  300
NIETMGGKDK GSDTSNSNPV EPTCVDTFGG LPKDLSSQSQ PIMVSSKVDA KPLNHKPTEE  360
LLPAKQPEAL DQEDDSKNDR SHCQIAESAI RGLADSGKNA EPVVASSSVC SGNSVERVSE  420
EPTQDLKRKY QEIEESEGPS EDVEEESVGA KRAAPARGST GSKRSRAAEV HNLSERRRRD  480
RINEKMRALQ ELIPNCNKVD KASMLDEAIE YLKTLQLQVQ IMSMGAGLYM PSMMLPPGMP  540
HMHAPHMAQF SPMGVGMGMG MGFGMGMPDM IVGSSGCSMI QMPPMHGAHF PSPPISGPSA  600
LHGMSGSNLP IFGLSSQGHP MPYPCAPLMP MSGGSLLKTT MGMNAGGVAG PMNNLDSAPV  660
SGSKDSIQNV NSRTMQNCGA NISMNQTSRQ CQVTNDRIEQ PALVQNSGPS SEVTDGGRAL  720
KSANANDNVP GRAAGFLILV IKSKSIILPV KVKPFPSSW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	474	479	ERRRRD

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00081	ChIP-seq	Transfer from AT1G09530	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088810.1	0.0	transcription factor PIF3 isoform X1
TrEMBL	A0A067JHJ2	0.0	A0A067JHJ2_JATCU; Uncharacterized protein
STRING	cassava4.1_002400m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5271	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-66	phytochrome interacting factor 3

Link Out ? help Back to Top
Entrez Gene	105647368

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]