PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00025.200

Common Name

JCGZ_19078, LOC105643614

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB_related

Protein Properties

Length: 441aa MW: 49822.8 Da PI: 6.7404

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00025.200	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30	1.2e-09	390	437	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 rW eE++ l ++v+++G g Wk I + +Rt+ ++k++w++ Jcr4S00025.200 390 RWAVEEEDALREGVEKFGIGKWKEILHFKHdifVKRTEVDLKDKWRNM 437 9******************************99*********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.876	383	441	IPR017930	Myb domain
SuperFamily	SSF46689	2.24E-14	385	439	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-11	385	439	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-6	387	440	IPR001005	SANT/Myb domain
CDD	cd11660	4.81E-19	389	439	No hit	No description
Pfam	PF00249	2.8E-7	390	437	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MLASSHAPWD NDNECLKKTV LLRSIDSEIR NGSISETILQ SLEIIEELDR NKKVKILDSM 60 KHAYCAVALD CTVKYMWGNL HAHCQAKYVA AVNRIWRGRI HKLEMLKMSE LVTDELKRCQ 120 GEIEAALSDS NVVERLQERN TQKDALILTG IYINEATAIM GPSFLESVAR IEKENIREKK 180 GKEVGSEKAA KDKAGEKSIA EKEDLRYDCS IKGANHHSNP DSGDVDGQRI SELDKSMVVM 240 LKPVFVSPLS YYILRRSKVP ARISNSNELD VDIGSISDII LPTPELNQTK ANSVIVELSR 300 KDMNQETLIE KQNEDADVAN PSTLGPEKDI TEHSLTERNG SAPACEKDSV DSVEVRTNHP 360 ICLDSPKGKN VSALGKSEAQ KFAIRRKMRR WAVEEEDALR EGVEKFGIGK WKEILHFKHD 420 IFVKRTEVDL KDKWRNMTKW S

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MLASSHAPWD NDNECLKKTV LLRSIDSEIR NGSISETILQ SLEIIEELDR NKKVKILDSM  60
KHAYCAVALD CTVKYMWGNL HAHCQAKYVA AVNRIWRGRI HKLEMLKMSE LVTDELKRCQ  120
GEIEAALSDS NVVERLQERN TQKDALILTG IYINEATAIM GPSFLESVAR IEKENIREKK  180
GKEVGSEKAA KDKAGEKSIA EKEDLRYDCS IKGANHHSNP DSGDVDGQRI SELDKSMVVM  240
LKPVFVSPLS YYILRRSKVP ARISNSNELD VDIGSISDII LPTPELNQTK ANSVIVELSR  300
KDMNQETLIE KQNEDADVAN PSTLGPEKDI TEHSLTERNG SAPACEKDSV DSVEVRTNHP  360
ICLDSPKGKN VSALGKSEAQ KFAIRRKMRR WAVEEEDALR EGVEKFGIGK WKEILHFKHD  420
IFVKRTEVDL KDKWRNMTKW S

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00052	PBM	Transfer from AT1G15720	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012084181.1	0.0	uncharacterized protein LOC105643614 isoform X2
TrEMBL	A0A067JYW0	0.0	A0A067JYW0_JATCU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2824	32	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	5e-17	TRF-like 5

Link Out ? help Back to Top
Entrez Gene	105643614

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]