PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00021.330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | CPP | ||||||||
Protein Properties | Length: 506aa MW: 54901.2 Da PI: 7.5641 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 51.2 | 2.5e-16 | 176 | 215 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Jcr4S00021.330 176 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 215 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 21.06 | 135 | 216 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 176 | 217 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 9.4E-13 | 179 | 214 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MGEGEGSEFP PKKAAQSETQ GGSDFPAKKL ARQLDFTQGN VVLPDHPQSQ QQPATLPLPL 60 KPVVITPQSQ PQQQPLQPQV LSMSAAPPPQ QLPPVRIVKP ESPKSKPRPN AELKDGIDML 120 PCFLMELSQM AVSFRREAVE ATLERNPNAF RPKIASSPHG TRDSREENGE GLVLGKHNKG 180 CHCKKSGCLK KYCECFQANI LCSENCKCMD CKNFEGSEER QALFHGDHAN NIAYIQQAAN 240 AAITGAIGSS GYASPPVSKK RKGQELLFGP TVKDPRPGNF QQLACHLHFH QAPHVRPSAP 300 SSSLSTNPVT RAGTAAALGP SKFTYRSLLA DIIQPQDLKE LCSVLVVVSE EAAKALADQR 360 NASEKRVEDQ TETSLASSTQ ERLQSQKEAD AEKINAYDCS IANQADKVGP DGSSSDGADV 420 PKGRPMSPGT LALMCDEQDT MFMTAASPNR LTGHGCSFTS QLPCGQGMTE IYAEQERIVL 480 SKFRDCLNRI IMFGELKGKF FTYSLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-23 | 135 | 225 | 53 | 132 | Protein lin-54 homolog |
5fd3_B | 2e-23 | 135 | 225 | 53 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214282 | 1e-107 | AC214282.1 Populus trichocarpa clone POP018-K04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012076721.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Refseq | XP_012076722.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Refseq | XP_020536631.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Swissprot | Q9SZD1 | 1e-169 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A067KPI7 | 0.0 | A0A067KPI7_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_023118m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2626 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-147 | Tesmin/TSO1-like CXC domain-containing protein |