PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00006.230
Common NameJCGZ_08187, JHL20J20.13
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 501aa    MW: 57015.9 Da    PI: 6.5894
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00006.230genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.4e-07440496148
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48 
                      r+ W +eE+e l ++v+++ ++      W++I +         R++ ++k++w+++l
   Jcr4S00006.230 440 RLLWRPEEEEMLREGVQKFSSKvnknlPWRKILEFGRhvfdASRSPSDLKDKWRNLL 496
                      677******************************99889*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.44E-93598IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.5E-93696IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE patternPS0135904891IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.2E-9434499IPR009057Homeodomain-like
PROSITE profilePS5129410.093435500IPR017930Myb domain
SuperFamilySSF466891.25E-8438497IPR009057Homeodomain-like
SMARTSM007172.0E-5439498IPR001005SANT/Myb domain
CDDcd116606.35E-10443496No hitNo description
PfamPF002491.3E-5443496IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MRIKTRSAKP RYCKSSHRSS SATTTSPPPS PIPGEDSSDN DWLEEKSCLM CNMGGQLLLC  60
SEIGCPIALH KECIVSKPRY DEEGNFYCPY CWFKLQLSIT GKLKKKVLLT KKVLESFLGH  120
NLTEVGGNKE NQNDGRAKGK DSNIIAVMGE NRCCDNKRME QETNDQQVDK EQDEGEGVLE  180
DEEQMESLNV MGENRCRVNK RMEQDTNAQQ VDKKQENGEG VFEDEEETKL LNVMGENHCH  240
DSLKMMEQET NNQKVDNKQD EGVFEDEDQT ESLTVQCVEK ETTFDGVLLH ESAGANSKTM  300
KSPKEKQAME EEKEKIHEDA PEINVSYTSK EAALDDAGTF DSDTETLAVR KRSVKKAKIK  360
YAVSPKKPSS HAYTTSAEET RNQNDKVGFF GRSCKKPTTH PAAEARNQNK KVNLLDRSRP  420
TQVSAKKLTK MPFSHEKRKR LLWRPEEEEM LREGVQKFSS KVNKNLPWRK ILEFGRHVFD  480
ASRSPSDLKD KWRNLLAKES S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0119610.0AP011961.1 Jatropha curcas DNA, clone: JHL20J20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073760.20.0uncharacterized protein JHL20J20.13 isoform X1
TrEMBLE6NTZ60.0E6NTZ6_JATCU; JHL20J20.13 protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-08MYB_related family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]