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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00002.200 | ||||||||
Common Name | JCGZ_08014, LOC105635152 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | SBP | ||||||||
Protein Properties | Length: 1043aa MW: 115683 Da PI: 8.2255 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.6 | 5.6e-41 | 150 | 227 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCevhsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Jcr4S00002.200 150 MCQVDNCKEDLSNAKDYHRRHKVCEVHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 227 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.9E-34 | 145 | 212 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.983 | 148 | 225 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.31E-37 | 149 | 229 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-29 | 151 | 224 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1043 aa Download sequence Send to blast |
MEEVGAQVAP IFIHQPLSGL FCDATPLPKK RDLSYQAPNF QLQQQHRFVQ NPRDNWNPKA 60 WDWDSVRFVA KPSDADANSN ILQLGITSSE LNKKKVEASG NRLPLKNAKL DEDDGLRLNL 120 AGGLSSVEEP VSRPNKRVRS GSPGTATYPM CQVDNCKEDL SNAKDYHRRH KVCEVHSKST 180 KALVGKQMQR FCQQCSRFHP LSEFDEGKRS CRRRLAGHNR RRRKTQPEDV ASRLLLPANH 240 DTTSTANLDI VNLLTVLART QGKNEEKSIN NNSSVPDREQ LIRILSKINS LPLPVDLAAK 300 LSNIASLNRK TAAQLSPEQQ KILHGTASSP STMDLLAVLS ATLAASAPDA LAILSQRSSQ 360 SSDSEKSRLT CIDQATGPNM QKRPVIDLPA VGGERSSSCY RSPIEDSGCQ LKEKFPNLPL 420 QLFGSSPENN SPPKMASSMK YFSSDSSNPS EGQSPSSSPP VVQKLFPMQS TTETVKSEKM 480 SVSREVNANV EGSRTHGCIL PLELFRSSNS GADQSSFQNF PYQAGYTSSS GSDHSPSSQN 540 SDAQDRTGRI IFKLFDKDPS HFPGKLRSQI YNWLSNSPSE MESYIRPGCV VLLKEICSGK 600 SNSLVQDSCS DFWRSGRFLL HTGRQLASHK DGNGSFMQIL ENMEFPRVAV SVPSGSXRLI 660 HDSCRIHCTY MGGYTSKEIT GSISPRAMHD EINMNGFKIH GASPSVLGRC FIEVENGFKG 720 NSFPLIIADA TICKELRLLE SEFDEGTEET DIISEEQAQC LGRPRSREEV WHFLNELGWL 780 FQRRAFSMFE LPDFSLSRFK FLLIFSVERD YCVLIKTVLD MLVERNLDMN GLSKESLDML 840 SEVQLVNRAV KRRCRKMVDL LIHYSINNND VSSRSYIFPP NLPGPGGITS LHLAACTSGS 900 DDLVDALTND PQEIGLSCWN SLLDANDQSP YAYAIMTNNH SYNTLVARKL ADRRNSQVSL 960 TIGTEMGQPY FQQGRRSCAR CAAVAAKYNR SIRGSQGLLQ RPYVHSMLAI AAVCVCVCLF 1020 LRGAPDIGLV APFKWETLDY GTI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-31 | 141 | 224 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 847 | 852 | RAVKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00155 | DAP | Transfer from AT1G20980 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ384295 | 1e-45 | FQ384295.1 Vitis vinifera clone SS0AAG20YM14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012073540.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A067KP35 | 0.0 | A0A067KP35_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_000685m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9694 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Entrez Gene | 105635152 |
Publications ? help Back to Top | |||
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