PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc068451.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 112aa MW: 13289.6 Da PI: 9.8754 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.4 | 4.3e-14 | 25 | 54 | 14 | 43 |
HHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsst 43 kR+++++K A+ELSvLCd+ev + +fs++ Itr_sc068451.1_g00001.1 25 EKRKETLFKQAKELSVLCDVEVGIAMFSPS 54 6***************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-5 | 6 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.24E-15 | 15 | 97 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.082 | 17 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-12 | 18 | 54 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MRGIQVGRHF TLMMMTESER KRRIEKRKET LFKQAKELSV LCDVEVGIAM FSPSEGGVPI 60 VWPSLEDARK KLLEFWALPE VERARKMVTH ERVLTDWVND EMRKMQKREN EV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 27 | RRIEKRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019171202.1 | 2e-40 | PREDICTED: agamous-like MADS-box protein AGL92 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31640.1 | 4e-14 | AGAMOUS-like 92 |